CN184656

Overview
NameCN184656
Unique NameCN184656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E3_ARATH (Eukaryotic translation initiation factor 4E type 3 OS=Arabidopsis thaliana GN=At5g18110 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = -1 
Query:  208 NGGKWTVIFPIGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKE--LLDYSDTIGFIFHEDAKHDNRS 489
            NGGKW + F    S   W   LLA++G+Q D  D ICGAV++VR  ++ IS+W +NAS+  A M +    K    L ++  + +  H+ +  DN S
Sbjct:  118 NGGKWIIRFSKVVSARFWEDLLLALVGDQLDDADNICGAVLSVRFNEDIISVWNRNASDHQAVMGLRDSIKRHLKLPHAYVMEYKPHDASLRDNSS 213
The following BLAST results are available for this feature:
BLAST of CN184656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
IF4E3_ARATH9.125e-1137.50Eukaryotic translation initiation factor 4E type 3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005N14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184656 ID=CN184656; Name=CN184656; organism=Citrus sinensis; type=EST; length=495bp
CTTTAAACTTCAAATATATTGCAAAGGTAAAATCAGCTACCGTTTTAAAG
AACCTTTTAAGAGGGTATTAGTACAGAAAACAGGAAATGGCAAAATGTTT
CAGAGCTCTATAACAACTAACAAGCCTACTGTCATCCAGAAAATACAATG
CATTTCCTGGGACTACACTGCAAAACTCTGTACAGTTTATGTTGTGTAGC
GATTCTTTGACCTGTTGTCATGCTTTGCATCCTCATGAAAGATGAACCCT
ATGGTGTCACTATAATCAAGCAACTCCTTCCACTGTTTCCCAATGCTCAT
CTGAGCAGCTTCATTTGAAGCATTCTTGGTCCACAGAGATATCTTTTCCT
GCCTAGCTCTAACATTTACAACTGCTCCACAGATTTCATCTCCATGATCA
AACTGTTCTCCAATCATTGCCAGCAACGTATACAGCCAAGAAGTATCAGA
TTTTCCTATAGGAAAGATGACTGTCCACTTCCCGCCATTAGCACA
back to top