CN184651

Overview
NameCN184651
Unique NameCN184651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length383
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2918 contig Csv1_Contig2918:38..420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184651 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.014e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = -3 
Query:  163 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 372
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CN184651 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.014e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = -3 
Query:  163 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 372
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CN184651 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.014e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = -3 
Query:  163 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 372
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CN184651 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.014e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = -3 
Query:  163 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 372
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CN184651 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.014e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = -3 
Query:  163 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 372
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CN184651 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.014e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = -3 
Query:  163 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 372
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CN184651 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.014e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = -3 
Query:  163 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 372
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CN184651 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.014e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = -3 
Query:  163 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 372
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CN184651 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.014e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = -3 
Query:  163 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 372
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CN184651 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.014e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = -3 
Query:  163 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 372
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
The following BLAST results are available for this feature:
BLAST of CN184651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_LUPAL7.014e-33100.00Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS7.014e-33100.00Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU7.014e-33100.00Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN7.014e-33100.00Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_DESAN7.014e-33100.00Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA7.014e-33100.00Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_BRARA7.014e-33100.00Ubiquitin OS=Brassica rapa PE=3 SV=1[more]
UBIQ_AVESA7.014e-33100.00Ubiquitin OS=Avena sativa PE=1 SV=1[more]
UBIQ_AVEFA7.014e-33100.00Ubiquitin OS=Avena fatua PE=3 SV=1[more]
UBIQ_ASPOF7.014e-33100.00Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184651 ID=CN184651; Name=CN184651; organism=Citrus sinensis; type=EST; length=383bp
CTCGTTCACAAACACAACATATAAAAACAAAAGACCATATTATCAATTAT
AACTAGTCTTCTTCAAGAAGACAAAGACAACATAAGGACCATCTTGAACA
GAAAAGACATTGACACGGGGCGCAGTGAATCCCCCTCAGAAACCACCACC
TCGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAAT
CAGCCAGAGTACGCCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGCCTC
TGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCTTTGACATT
GTCAATGGTATCAGAACTCTCTACCTCCAGGGTAATCGTCTTCCCGGTCA
ATGTCTTAACAAAAATCTGCATGCCACCCCTCA
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