CN184651

Overview
NameCN184651
Unique NameCN184651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length383
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2918 contig Csv1_Contig2918:38..420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184651 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.614e-15
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = -3 
Query:  163 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 372
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLV
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
[Close]
BLAST of CN184651 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.122e-13
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = -3 
Query:  163 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 372
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLV
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLV 70
The following BLAST results are available for this feature:
BLAST of CN184651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBL1_SCHPO8.614e-1550.00Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST2.122e-1350.00NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184651 ID=CN184651; Name=CN184651; organism=Citrus sinensis; type=EST; length=383bp
CTCGTTCACAAACACAACATATAAAAACAAAAGACCATATTATCAATTAT
AACTAGTCTTCTTCAAGAAGACAAAGACAACATAAGGACCATCTTGAACA
GAAAAGACATTGACACGGGGCGCAGTGAATCCCCCTCAGAAACCACCACC
TCGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAAT
CAGCCAGAGTACGCCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGCCTC
TGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCTTTGACATT
GTCAATGGTATCAGAACTCTCTACCTCCAGGGTAATCGTCTTCCCGGTCA
ATGTCTTAACAAAAATCTGCATGCCACCCCTCA
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