CN184637 | Citrus Genome Database

Overview


Name	CN184637
Unique Name	CN184637
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	408

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.223e-15
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = -1

Query:  154 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 345
            LPGYG  TNIINGG+ECG   +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L+   +
Sbjct:  261 LPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDL 324

HSP 2 Score: 25.409 bits (54), Expect = 6.223e-15
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = -2

Query:  342 HEVIFDEWKPSANDV--KRRPGF 404
            H+VI   W PS+ DV  +R PG+
Sbjct:  242 HDVITSRWTPSSADVAARRLPGY 264

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.225e-15
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = -1

Query:  181 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 345
            +PGYG+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  G NLDC NQRP+
Sbjct:  267 VPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321

HSP 2 Score: 25.0238 bits (53), Expect = 6.225e-15
Identity = 10/24 (41.67%), Postives = 14/24 (58.33%), Query Frame = -2

Query:  342 CHEVIFDEWKPSAND--VKRRPGF 407
            CH V+  +W P+ ND    R PG+
Sbjct:  247 CHAVMTGQWTPNGNDQAAGRVPGY 270

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.226e-15
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = -1

Query:  181 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 345
            +PGYG+ TNIINGGIECG+  ++ V +R+GF+  +C  FG+ PG NLDC+NQR +
Sbjct:  265 VPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319

HSP 2 Score: 22.7126 bits (47), Expect = 6.226e-15
Identity = 11/23 (47.83%), Postives = 13/23 (56.52%), Query Frame = -2

Query:  342 HEVIFDEWKPSAND--VKRRPGF 404
            H+VI   W PSA D    R PG+
Sbjct:  246 HDVITGRWTPSAADSSAGRVPGY 268

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.050e-14
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = -1

Query:  169 LPGYGLTTNIINGGIECGYVG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNL 345
            +PGYG+ TNIINGGIECG  G N A  +RIGF+  +C   G   G NLDC  QRP+G  L
Sbjct:  274 VPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333

HSP 2 Score: 26.5646 bits (57), Expect = 1.050e-14
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = -2

Query:  342 CHEVIFDEWKPSANDVK--RRPGF 407
            CH VI   W PSA D++  R PG+
Sbjct:  254 CHAVITGNWTPSAADLEAGRVPGY 277

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-14
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = -1

Query:  154 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 345
            LPGYG  TNIINGG+ECG   +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L    +
Sbjct:  260 LPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDL 323

HSP 2 Score: 25.409 bits (54), Expect = 1.051e-14
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = -2

Query:  342 HEVIFDEWKPSANDV--KRRPGF 404
            H+VI   W PS+ DV  +R PG+
Sbjct:  241 HDVITSRWTPSSADVAARRLPGY 263

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.374e-14
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = -1

Query:  181 PGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 342
            PG G+ TNIINGGIECG   N AV +RIG++  +CG   + PGDNLDC NQR +
Sbjct:  197 PGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250

HSP 2 Score: 23.8682 bits (50), Expect = 1.374e-14
Identity = 11/22 (50.00%), Postives = 12/22 (54.55%), Query Frame = -2

Query:  345 HEVIFDEWKPSAND--VKRRPG 404
            H+VI   W PSA D    R PG
Sbjct:  177 HDVIIGSWTPSAADQSANRAPG 198

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.785e-14
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = -1

Query:  181 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 345
            +PGYG+ TNIINGG+EC    N AV +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  196 VPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250

HSP 2 Score: 25.7942 bits (55), Expect = 1.785e-14
Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = -2

Query:  342 CHEVIFDEWKPSAND--VKRRPGF 407
            CH VI  +W PS  D    R PG+
Sbjct:  176 CHNVIIGQWTPSPADTAANRVPGY 199

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.309e-14
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = -1

Query:  154 GYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 339
            GYG+ TNIINGG+ECG   N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  241 GYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302

HSP 2 Score: 25.0238 bits (53), Expect = 2.309e-14
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = -2

Query:  363 CHEVIFDEWKPSAND 407
            CH VI   W PS++D
Sbjct:  219 CHNVIIGAWSPSSSD 233

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.995e-14
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = -1

Query:  178 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 345
            +PGYG+ TNIINGG+ECG+  +D V +RIGF+  +C   G+    NLDC +QRP+G
Sbjct:  270 VPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325

HSP 2 Score: 25.0238 bits (53), Expect = 2.995e-14
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = -2

Query:  342 CHEVIFDEWKPSAND--VKRRPGF 407
            CH V   +W PSA+D    R PG+
Sbjct:  250 CHAVATGQWTPSADDQAAGRVPGY 273

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.010e-14
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = -1

Query:  181 TPAG-LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 357
            T AG +PGYG+ TNIINGGIECG   NDA  +RIG++  +C   G   G NLDC NQR +
Sbjct:  200 TAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259

HSP 2 Score: 27.335 bits (59), Expect = 3.010e-14
Identity = 12/24 (50.00%), Postives = 14/24 (58.33%), Query Frame = -2

Query:  342 CHEVIFDEWKPSANDVK--RRPGF 407
            CH+VI   W PSA D    R PG+
Sbjct:  185 CHDVILGRWTPSAADTAAGRVPGY 208

The following BLAST results are available for this feature:

BLAST of CN184637 vs. ExPASy Swiss-Prot

BLAST of CN184637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41


Match Name	E-value	Identity	Description
CHIT_PHAVU	6.223e-15	50.00	Endochitinase OS=Phaseolus vulgaris PE=1 SV=1	[more]
CHI1_ORYSJ	6.225e-15	54.55	Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht...	[more]
CHIX_PEA	6.226e-15	56.36	Endochitinase OS=Pisum sativum PE=2 SV=1	[more]
CHI6_POPTR	1.050e-14	56.67	Acidic endochitinase WIN6 OS=Populus trichocarpa G...	[more]
CHI5_PHAVU	1.051e-14	50.00	Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1	[more]
CHIP_TOBAC	1.374e-14	59.26	Acidic endochitinase P OS=Nicotiana tabacum PE=1 S...	[more]
CHIA_SOLCI	1.785e-14	52.73	Acidic endochitinase pcht28 OS=Solanum chilense PE...	[more]
CHI2_GOSHI	2.309e-14	51.61	Endochitinase 2 (Fragment) OS=Gossypium hirsutum P...	[more]
CHI12_ORYSJ	2.995e-14	53.57	Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch...	[more]
CHI8_ORYSJ	3.010e-14	56.67	Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0005N03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN184637 ID=CN184637; Name=CN184637; organism=Citrus sinensis; type=EST; length=408bp
GAGGCATTGATCCATGTTGGATCAGTCTTATTTAATTTACTTACAATAAG
AGCGTAACAGTTTAGTTGTCCACCTACAAGTGTGACATCTAAAGTTTTTA
TTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACGTTGATCATGATGAT
TCACATAGATTGTGCCATCAGATTAAGGCCATAAGGCCGTTGGTTGGAGC
AATCAAGATTGTCACCAGGCTGAATCCCAAACTTGCCACAGAAAGTGGTA
AAGAACCCAATACGGTTACGTACAGCGTCATTCCCAACGTAGCCACATTC
AATTCCACCGTTGATTATATTTGTGGTTAGACCGTATCCCGGAAGCCCGG
CCGGCGTTTTACGTCATTTGCTGATGGTTTCCATTCGTCGAAAATGACTT
CGTGGCAC