DC887419

Overview
NameDC887419
Unique NameDC887419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DC887419 vs. ExPASy Swiss-Prot
Match: TPPC3_CAEEL (Probable trafficking protein particle complex subunit 3 OS=Caenorhabditis elegans GN=ZK1098.5 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.253e-27
Identity = 63/137 (45.99%), Postives = 93/137 (67.88%), Query Frame = -2 
Query:  243 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPD--TCQGLYYCNILSGVIRGALEMVSMK 644
            ++++AELF LTYGA V ++L D E+ ++V  QLD+MG+N+G RL D+FLAK +NV RCVD R+ A+V+ +     +LG++AT S+W +     +I LE NPL + V++P      GL Y  +++G IRGALE V  K
Sbjct:   13 KKMSAELFCLTYGAMVTEMLKDYEDPKDVTIQLDKMGFNMGTRLADDFLAKNANVPRCVDTRQIADVLCRNAIPCYLGISATASSWTSGDREFTITLEANPLTELVQVPAHLVSAGLSYSQLIAGAIRGALEAVHFK 149
The following BLAST results are available for this feature:
BLAST of DC887419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TPPC3_CAEEL3.253e-2745.99Probable trafficking protein particle complex subu... [more]

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Properties
Property NameValue
Genbank descriptionDC887419 EIC Citrus sinensis cDNA clone EIC0346 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887419 ID=DC887419; Name=DC887419; organism=Citrus sinensis; type=EST; length=648bp
AAACCTATTCAAAGTTTCTCCCAAGTGAATATTTATACAGAGAACAAGCT
GTTAAAACTGATATTCTTTAGGGAAAATGAAGTGCAAGAATGTAAACTCG
GTATGTCCGCATCAGGCACCAAGACAGGATATTACTCATCATCCTTGTAT
GGATATTCTTCTGGGACTTGTTTCAGAAGTTTCACCTGCAGCTCATATGC
ATCATCCCCTCGAAGCACATCGCGGATCCAAGTGACTTCAGTTTTCATTG
AAACCATCTCTAGGGCCCCTCTAATGACTCCACTCAAGATGTTGCAATAA
TAAAGGCCTTGACAAGTATCAGGAAGCTCAACAAAATCCACCAGAGGATT
ATCTTCCAAAATTATACTGCAACATGTCCCATCAGCATCCCAGTTGCTCA
CGGTTGCAGTAACCCCTAAAAACATTTTGAAACCCACCTTTGCAATCACT
TCAGCAGTCTCCCTGAAGTCTACACACCTAGTGACATTAGATTTTGCTAG
AAACTCATCAATCAGTCGAATCCCAATATTATAGCCCATTTGATCAAGCT
GTTTGTTAACTTCCTCAACCTCCTCCAGATCCGTGAGCAGCTGACGCACA
GTGGCGCCGTAAGTTAATGTAAACAGCTCAGCATTCACGCGTTCCACG
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