CN184610

Overview
NameCN184610
Unique NameCN184610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184610 vs. ExPASy Swiss-Prot
Match: IF5A_STAMF (Translation initiation factor 5A OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = 2
Query:  134 SKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGNHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 475
            SKTY    G ++   +I+I   PC++VE+S +KTG HG AK H V I +F+G K   + P     +VP + +   Q+I    D    +  E   T  ++  P+DE L  +LK G
Sbjct:    2 SKTYAT-LGELKPGNFIIIDGEPCRIVEMSKAKTGKHGSAKAHVVAIGLFTGNKKTLVAPVDQRVEVPVIEKRVGQIIADMGDLLQVMDMETFET-FEVEKPSDEKLREKLKPG 113          
BLAST of CN184610 vs. ExPASy Swiss-Prot
Match: IF5A_METS5 (Translation initiation factor 5A OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 40/130 (30.77%), Postives = 68/130 (52.31%), Query Frame = 2
Query:  158 GTIRKNGYIVIKSRPCKVVEVSTSKTGNHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 547
            G +++  YIVI   PC+VVEV+ +KTG HG AK + + + IF+G K   + P     +VP + +   Q+I    D    +  E   T  ++ +PT+E + +++K      KD  +     MG ++I  +K
Sbjct:    9 GEMKEGSYIVIDGEPCRVVEVTKAKTGKHGSAKANIIAVSIFTGAKKTLMAPVDSTVEVPIIEKRMGQVISNVGDKVQIMDLETYET-FEIDMPTEEDVASKIK------KDAEVEYWEVMGRKKIVRVK 131          
BLAST of CN184610 vs. ExPASy Swiss-Prot
Match: IF5A_KORCO (Translation initiation factor 5A OS=Korarchaeum cryptofilum (strain OPF8) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 41/127 (32.28%), Postives = 64/127 (50.39%), Query Frame = 2
Query:  155 AGTIRKNGYIVIKSRPCKVVEVSTSKTGNHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQI 535
            AG +RK  Y+++   PC+V+EVS SK G HG AK       IF G +   I P+    ++P V++   Q+I++     V L+        +L LP D  L ++LK G      + +    SMG+ +I
Sbjct:    8 AGDLRKGSYVILDDEPCEVLEVSKSKPGKHGSAKVRVEARGIFDGARRSKIFPADALVEIPIVDKKTAQVINV-YGNVVQLMDLETYETFELPLPEDPELASRLKSG------IEVEYWESMGKRKI 127          
The following BLAST results are available for this feature:
BLAST of CN184610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
IF5A_STAMF2.709e-1135.09Translation initiation factor 5A OS=Staphylothermu... [more]
IF5A_METS56.036e-1130.77Translation initiation factor 5A OS=Metallosphaera... [more]
IF5A_KORCO7.883e-1132.28Translation initiation factor 5A OS=Korarchaeum cr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005M12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184610 ID=CN184610; Name=CN184610; organism=Citrus sinensis; type=EST; length=676bp
GAGGCCTCGCTCGGTCGCCCCCCAGGCTATCTCAAAATCTCGCTCAGTAA
ATCGGCCGAGTCGGAATCAGTCAGTGCTTAAAGCGATGTCGGACGAGGAG
CATCACTTCGAGTCAAAGGCCGATGCCGGAGCCTCCAAGACTTACCCACA
GCAAGCTGGTACCATCCGTAAGAACGGCTACATCGTCATCAAAAGCCGTC
CCTGCAAGGTTGTGGAAGTCTCCACCTCCAAGACTGGAAATCACGGTCAT
GCTAAGTGCCACTTTGTTGGAATTGATATCTTCAGTGGAAAGAAGCTGGA
AGATATTGTCCCCTCTTCTCATAACTGTGATGTTCCCCATGTCAACCGTA
CCGACTATCAGTTGATTGATATTTCTGAGGATGGATTTGTGAGTTTGCTG
ACTGAAAATGGGAACACCAAGGATGATCTGAGGCTCCCAACCGATGAGAC
TCTGCTGACCCAGCTCAAGGACGGTTTTGCTGAGGGGAAGGACTTGGTTT
TGACTGTCATGTCTTCAATGGGCGAGGAGCAGATCTGTGCCCTCAAGGAT
ATTGGCCCAAAGTCGTAGTTGCGCGATATGTGATTATCTTCTGTGTCTGG
TTGCATCTGTTTTTTGGAAAAATATTTTAATCATCTAGAGTTTGCCTTTA
ATATTTGTAGCGTCTTTGTTTTGTGG
back to top