CN184605

Overview
NameCN184605
Unique NameCN184605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.057e-30
Identity = 69/140 (49.29%), Postives = 90/140 (64.29%), Query Frame = -2
Query:  250 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGP-PTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGP--------TKVTTASSTPAALSPKV 642
            E F+ + TLNPKQK  LA +L L+PRQVEVWFQNRRAR+KLKQTE++CEYLKRW   L ++N+RL++E+ +LRA+K  P P   S        A+TL+MCP C RV T      P        +  T +SS+ AA +  V
Sbjct:  129 ECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPSCRRVATAGAPHQPNHQQCHPKSNTTISSSSTAAAAVAV 268          
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.057e-30
Identity = 69/140 (49.29%), Postives = 90/140 (64.29%), Query Frame = -2
Query:  250 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGP-PTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGP--------TKVTTASSTPAALSPKV 642
            E F+ + TLNPKQK  LA +L L+PRQVEVWFQNRRAR+KLKQTE++CEYLKRW   L ++N+RL++E+ +LRA+K  P P   S        A+TL+MCP C RV T      P        +  T +SS+ AA +  V
Sbjct:  129 ECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPSCRRVATAGAPHQPNHQQCHPKSNTTISSSSTAAAAVAV 268          
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.913e-28
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = -2
Query:  325 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVT 642
            E+F+ + TLNPKQK+ LA QL L+ RQVEVWFQNRRAR+KLKQTE++CE+L+R   +LTE+NRRLQ+EV ELRA+K+ P   +        P +TL+MCP CE V+
Sbjct:  143 ETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQFYM-----HMSPPTTLTMCPSCEHVS 243          
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSJ (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica GN=HOX28 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.970e-28
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = -2
Query:  313 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAV 642
            E F+ +HTL PKQK  LA  L L+PRQVEVWFQNRRAR+KLKQTE++CE+LKRW   L + NRRL +E+ ELRA+K  P    +P +  P P +TL+MC  C+RV    V
Sbjct:  108 ECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATP----TPPAAAP-PLTTLTMCLSCKRVANAGV 212          
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSI (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. indica GN=HOX28 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.970e-28
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = -2
Query:  313 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAV 642
            E F+ +HTL PKQK  LA  L L+PRQVEVWFQNRRAR+KLKQTE++CE+LKRW   L + NRRL +E+ ELRA+K  P    +P +  P P +TL+MC  C+RV    V
Sbjct:  108 ECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATP----TPPAAAP-PLTTLTMCLSCKRVANAGV 212          
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.970e-28
Identity = 59/105 (56.19%), Postives = 81/105 (77.14%), Query Frame = -2
Query:  328 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERV 642
            ESF+ + TLNPKQK+ LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LK+   +L ++N RLQ+E++EL+ +K+  P  +       +PASTL+ CP CER+
Sbjct:  127 ESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMH------MPASTLTKCPSCERI 225          
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.221e-27
Identity = 62/105 (59.05%), Postives = 76/105 (72.38%), Query Frame = -2
Query:  328 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERV 642
            E+F+ ++TLNPKQK  LA +L L  RQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+NRRLQ+E  ELR +K+ P         +  P +TL MCP CERV
Sbjct:  144 ETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSP-----QFYGQMTPPTTLIMCPSCERV 243          
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.372e-27
Identity = 61/105 (58.10%), Postives = 77/105 (73.33%), Query Frame = -2
Query:  328 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERV 642
            ++F+ ++TLNPKQK  LA +L L  RQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+NRRL++E  ELRA+K+ P         +  P +TL MCP CERV
Sbjct:  149 DTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRALKLSPRLY-----GQMSPPTTLLMCPSCERV 248          
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSI (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. indica GN=HOX7 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.651e-26
Identity = 65/142 (45.77%), Postives = 87/142 (61.27%), Query Frame = -2
Query:  238 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELR-AMKVGPPTVISPHSCEPLPA---STLSMCPRCER---VTTTAVDKGPTKVTTASSTPAALSPKVGTPA 642
            +SF+ + TL PKQK +LA +L L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR    LT +NRRLQREV ELR A++    +    +    LPA   +   +CP CE    V   A +    +V      PAA++     P+
Sbjct:  167 DSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGALRTTTSSYPPLYGLHHLPAAAGTVFRVCPSCEHSKVVAAAASESFSPRVFAGGGAPAAITAAAAVPS 308          
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSJ (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. japonica GN=HOX7 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.934e-26
Identity = 63/142 (44.37%), Postives = 82/142 (57.75%), Query Frame = -2
Query:  238 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEE----LRAMKVGPPTVISPHSCEPLPASTLSMCPRCER---VTTTAVDKGPTKVTTASSTPAALSPKVGTPA 642
            +SF+ + TL PKQK +LA +L L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR    LT +NRRLQREV E    LR      P +   H       +   +CP CE    V   A +    +V      PAA++     P+
Sbjct:  167 DSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGTLRTTTSSYPPLYGLHHLPAAAGTVFRVCPSCEHSKVVAAAASESFSPRVFAGGGAPAAITAAAAVPS 308          
The following BLAST results are available for this feature:
BLAST of CN184605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
HOX2_ORYSJ9.057e-3049.29Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI9.057e-3049.29Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HAT4_ARATH2.913e-2858.49Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HOX28_ORYSJ4.970e-2856.36Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX28_ORYSI4.970e-2856.36Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HAT9_ARATH4.970e-2856.19Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HAT2_ARATH3.221e-2759.05Homeobox-leucine zipper protein HAT2 OS=Arabidopsi... [more]
HAT1_ARATH9.372e-2758.10Homeobox-leucine zipper protein HAT1 OS=Arabidopsi... [more]
HOX7_ORYSI4.651e-2645.77Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HOX7_ORYSJ7.934e-2644.37Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005M09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184605 ID=CN184605; Name=CN184605; organism=Citrus sinensis; type=EST; length=643bp
ACAATTAATTAAGATCGAGAAACAATCCCCAAGAAATTAACTAAGATATC
TAAGCAGATCAGATACCACACATATATATCAATGATAGTATCTTATCTTC
ATTGGTATCTTGCATGCACACTTGCATATTTCTTTTCCTATGAACATCCT
CTAAAACTAATTTCTCCTTTTGCTTTTGATTAATGTTTTGCCACGTTTAA
CTTTCCATCAGGCCGCCGAAGGCTACCGTGACTGGAGGGCCGGCGTCCCG
ACTTTAGGAGACAATGCCGCGGGAGTGGAGGAGGCGGTGGTGACCTTGGT
GGGGCCCTTGTCAACGGCGGTGGTGGTCACGCGCTCACACCGTGGACACA
TTGATAGGGTTGATGCCGGGAGTGGCTCACAACTGTGGGGAGAGATCACG
GTGGGTGGGCCCACCTTCATAGCCCTGAGCTCCTCCACTTCCCTTTGCAG
CCTCCTGTTTTGTTCAGTCAATGAACCAAACCATCTCTTCAAGTACTCGC
ATTCCATCTCCGTTTGCTTCAGCTTGCTCCTGGCCCTACGATTCTGAAAC
CAGACTTCAACTTGACGTGGCTTCAGCTTCAACTGCGTAGCCAGTTCTTC
TTTCTGCTTAGGGTTAAGGGTGTGGTTATGTCTGAAACTTTCT
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