CN184605

Overview
NameCN184605
Unique NameCN184605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSI (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. indica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.496e-24
Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = -2
Query:  280 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLP----ASTLSMCPRCERVTTTAVDKGPTKVTTAS 642
            +SFR ++ L+  QK ELA QLKLKPRQVEVWFQNRRAR+KLKQTE++CE+LKR   SLTE+N++L+ E+ ELR +                P    A+ +++CP CE+VT      G T  +++S
Sbjct:  129 DSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASAAAAAAGSQLYVQFPRAAAAAMVNVCPSCEKVTVMGGGGGETGKSSSS 253          
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSJ (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. japonica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.552e-24
Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = -2
Query:  280 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLP----ASTLSMCPRCERVTTTAVDKGPTKVTTAS 642
            +SFR ++ L+  QK ELA QLKLKPRQVEVWFQNRRAR+KLKQTE++CE+LKR   SLTE+N++L+ E+ ELR +                P    A+ +++CP CE+VT      G T  +++S
Sbjct:  129 DSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASPAAAAAGSQLYVQFPRAAAAAMVNVCPSCEKVTVMGGGGGETGKSSSS 253          
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: HOX26_ORYSJ (Putative homeobox-leucine zipper protein HOX26 OS=Oryza sativa subsp. japonica GN=HOX26 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.394e-19
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = -2
Query:  337 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRC 642
            +SFR ++ L+  +K+ELA +L L  RQVEVWFQNRRAR+KLKQTE +C+ L+RW   L   N RL+R++ ELR     PP          L  +T  +CP C
Sbjct:  131 DSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELRRSSSSPPV-------SGLAVATPVVCPSC 225          
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: ATB23_ARATH (Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 40/97 (41.24%), Postives = 59/97 (60.82%), Query Frame = -2
Query:  352 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLS 642
            + F   + L   +K ELA  L L+PRQ+ +WFQNRRARSK KQ E + + LKR F SL ++N  LQ + ++L+A       V++  S EP+ +  L+
Sbjct:   85 KDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVLQTQNQKLQAQ------VMALKSREPIESINLN 175          
BLAST of CN184605 vs. ExPASy Swiss-Prot
Match: ATB13_ARATH (Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = -2
Query:  409 ESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVG 642
            ++F   + L P++K +LA  L L+PRQ+ +WFQNRRAR K KQ E + + LKR F +L  +N  LQ   ++L+A  +G
Sbjct:   99 KNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDTLKAENDLLQTHNQKLQAEIMG 176          
The following BLAST results are available for this feature:
BLAST of CN184605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
HOX18_ORYSI1.496e-2448.00Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
HOX18_ORYSJ2.552e-2448.00Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
HOX26_ORYSJ9.394e-1947.06Putative homeobox-leucine zipper protein HOX26 OS=... [more]
ATB23_ARATH1.112e-1141.24Homeobox-leucine zipper protein ATHB-23 OS=Arabido... [more]
ATB13_ARATH9.416e-1143.59Homeobox-leucine zipper protein ATHB-13 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005M09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184605 ID=CN184605; Name=CN184605; organism=Citrus sinensis; type=EST; length=643bp
ACAATTAATTAAGATCGAGAAACAATCCCCAAGAAATTAACTAAGATATC
TAAGCAGATCAGATACCACACATATATATCAATGATAGTATCTTATCTTC
ATTGGTATCTTGCATGCACACTTGCATATTTCTTTTCCTATGAACATCCT
CTAAAACTAATTTCTCCTTTTGCTTTTGATTAATGTTTTGCCACGTTTAA
CTTTCCATCAGGCCGCCGAAGGCTACCGTGACTGGAGGGCCGGCGTCCCG
ACTTTAGGAGACAATGCCGCGGGAGTGGAGGAGGCGGTGGTGACCTTGGT
GGGGCCCTTGTCAACGGCGGTGGTGGTCACGCGCTCACACCGTGGACACA
TTGATAGGGTTGATGCCGGGAGTGGCTCACAACTGTGGGGAGAGATCACG
GTGGGTGGGCCCACCTTCATAGCCCTGAGCTCCTCCACTTCCCTTTGCAG
CCTCCTGTTTTGTTCAGTCAATGAACCAAACCATCTCTTCAAGTACTCGC
ATTCCATCTCCGTTTGCTTCAGCTTGCTCCTGGCCCTACGATTCTGAAAC
CAGACTTCAACTTGACGTGGCTTCAGCTTCAACTGCGTAGCCAGTTCTTC
TTTCTGCTTAGGGTTAAGGGTGTGGTTATGTCTGAAACTTTCT
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