DC887412

Overview
NameDC887412
Unique NameDC887412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: Y090_HAEIN (UPF0001 protein HI0090 OS=Haemophilus influenzae GN=HI0090 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.873e-17
Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = -1
Query:  205 RKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP-DYTSTPEN-FKTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 546
            + PL VL+Q+N S EESKSG++P   L L KH+ +N P+L   GLM I  P D  +  EN F+ + +   ++ + L  P +Q D LSMGM+ D   AI+ GST VRIG+ IFGAR Y
Sbjct:  118 KAPLNVLIQINISDEESKSGIQPEEMLTLAKHI-ENLPHLCLRGLMAIPAPTDNIAEQENAFRKMLELFEQLKQVL--PNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNY 231          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: Y274_AQUAE (UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_274 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = -1
Query:  205 VLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPEN----FKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 531
            VL++VN  GEE+K GVEP    EL ++  +  PN++  GLMTI  P Y   PE+    F+ L + R E+ +   +      LSMGMS DFE+AIE G+T VRIG+ +FG R+Y
Sbjct:  121 VLIEVNVGGEETKGGVEPENLKELFEYTLE-LPNVKVLGLMTI--PPYLENPEDVRPYFRKLRELRDELQREYNVALPH--LSMGMSHDFEVAIEEGATIVRIGTLLFGERKY 228          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: Y395_HELPJ (UPF0001 protein jhp_0986 OS=Helicobacter pylori J99 GN=jhp_0986 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = -1
Query:  220 LKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 537
            L  L+QVN++ EESKSGV P   LE    +S+ C  L+  GLM IG    D T   ++F T  K   ++  A         LSMGMS DFELAI  G+  +RIGS +F
Sbjct:  120 LNALLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTTTKKLFDQIKNA-------SVLSMGMSDDFELAIACGANLLRIGSFLF 220          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: YGGS_ECOLI (UPF0001 protein yggS OS=Escherichia coli (strain K12) GN=yggS PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.684e-12
Identity = 49/118 (41.53%), Postives = 62/118 (52.54%), Query Frame = -1
Query:  196 PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD---LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 540
            PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+     E  +     R       G+         LS+GMS D E AI  GST VRIG+ IFGAR+Y KK
Sbjct:  122 PLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: YGGS_ECOL6 (UPF0001 protein yggS OS=Escherichia coli O6 GN=yggS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.684e-12
Identity = 49/118 (41.53%), Postives = 62/118 (52.54%), Query Frame = -1
Query:  196 PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD---LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 540
            PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+     E  +     R       G+         LS+GMS D E AI  GST VRIG+ IFGAR+Y KK
Sbjct:  122 PLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: YGGS_ECO57 (UPF0001 protein yggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.684e-12
Identity = 49/118 (41.53%), Postives = 62/118 (52.54%), Query Frame = -1
Query:  196 PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD---LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 540
            PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+     E  +     R       G+         LS+GMS D E AI  GST VRIG+ IFGAR+Y KK
Sbjct:  122 PLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: Y395_HELPY (UPF0001 protein HP_0395 OS=Helicobacter pylori GN=HP_0395 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.684e-12
Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = -1
Query:  220 LKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 537
            L  L+QVN++ EESKSGV P   LE+   +S+ C +L+  GLM IG    D     ++F T  K   ++  A         LSMGMS DFELAI  G+  +RIGS +F
Sbjct:  120 LNALLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFITTKKLFDQIKNA-------SVLSMGMSDDFELAIACGANLLRIGSFLF 220          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: Y394_PSEAE (UPF0001 protein PA0394 OS=Pseudomonas aeruginosa GN=PA0394 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12
Identity = 51/116 (43.97%), Postives = 62/116 (53.45%), Query Frame = -1
Query:  205 GRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKA-LGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 549
            G  PL V +QVN SGE SKSG  P     L + V Q  PNL   GLM I  P      ++    A+ R  +    LG+      LSMGMS D E AI  G+T VRIG+ +FGAR+Y
Sbjct:  116 GLPPLNVCLQVNVSGEASKSGCAPEDLPALAEAVKQ-LPNLRLRGLMAIPEPTAERAAQH-AAFARLRELLLDLNLGLDT----LSMGMSDDLEAAIGEGATWVRIGTALFGARDY 225          
The following BLAST results are available for this feature:
BLAST of DC887412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
Y090_HAEIN3.873e-1747.01UPF0001 protein HI0090 OS=Haemophilus influenzae G... [more]
Y274_AQUAE3.278e-1645.13UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_2... [more]
Y395_HELPJ5.787e-1343.52UPF0001 protein jhp_0986 OS=Helicobacter pylori J9... [more]
YGGS_ECOLI1.684e-1241.53UPF0001 protein yggS OS=Escherichia coli (strain K... [more]
YGGS_ECOL61.684e-1241.53UPF0001 protein yggS OS=Escherichia coli O6 GN=ygg... [more]
YGGS_ECO571.684e-1241.53UPF0001 protein yggS OS=Escherichia coli O157:H7 G... [more]
Y395_HELPY1.684e-1242.59UPF0001 protein HP_0395 OS=Helicobacter pylori GN=... [more]
Y394_PSEAE3.751e-1243.97UPF0001 protein PA0394 OS=Pseudomonas aeruginosa G... [more]

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Properties
Property NameValue
Genbank descriptionDC887412 EIC Citrus sinensis cDNA clone EIC0336 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887412 ID=DC887412; Name=DC887412; organism=Citrus sinensis; type=EST; length=558bp
TGNACCATCTTATGAAGGGTCAACAAGTATAGCCCCCAAAAATCATCATT
CAAGAGTGAAAAGAAAAACTACAGCATCGAAAGAACAAGTGCATAAAAAA
TATGATTAATCTACTATACTCTAGTTTCAGTACATTAAGATAAATACATA
ACAATAGCCAACGTTTTCAGAACAGGTGAAAAAAAAAGTTTAGTTCTTCT
TCGGATATTCCCTTGCACCAAATATTGTGGATCCAATCCTGACATTGGTG
CTCCCCATTTCAATAGCAAGCTCGAAGTCACCAGACATTCCCATAGACAG
ATCACATTGCTCTTCTGGTATTCCAAGAGCCTTGCATACCTCACTTCTGC
ATTTTGCTAATGTCTTGAAGTTCTCCGGGGTCGATGTGTAATCTGGCATC
CCAATTGTCATTAGGCCACAAAACTCAAGATTCGGACAGTTTTGACTAAC
ATGTTTCACAAGTTCCAGACACCCTGAAGGCTCAACTCCAGATTTCGATT
CTTCTCCACTGGTATTCACTTGAACCAAGACTTTTAAAGGCTTCCTTCCC
ATGGTTTC
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