DC887412
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: Y090_HAEIN (UPF0001 protein HI0090 OS=Haemophilus influenzae GN=HI0090 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 3.873e-17 Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = -1 Query: 205 RKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP-DYTSTPEN-FKTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 546 + PL VL+Q+N S EESKSG++P L L KH+ +N P+L GLM I P D + EN F+ + + ++ + L P +Q D LSMGM+ D AI+ GST VRIG+ IFGAR Y Sbjct: 118 KAPLNVLIQINISDEESKSGIQPEEMLTLAKHI-ENLPHLCLRGLMAIPAPTDNIAEQENAFRKMLELFEQLKQVL--PNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNY 231
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: Y274_AQUAE (UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_274 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16 Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = -1 Query: 205 VLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPEN----FKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 531 VL++VN GEE+K GVEP EL ++ + PN++ GLMTI P Y PE+ F+ L + R E+ + + LSMGMS DFE+AIE G+T VRIG+ +FG R+Y Sbjct: 121 VLIEVNVGGEETKGGVEPENLKELFEYTLE-LPNVKVLGLMTI--PPYLENPEDVRPYFRKLRELRDELQREYNVALPH--LSMGMSHDFEVAIEEGATIVRIGTLLFGERKY 228
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: Y395_HELPJ (UPF0001 protein jhp_0986 OS=Helicobacter pylori J99 GN=jhp_0986 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13 Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = -1 Query: 220 LKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 537 L L+QVN++ EESKSGV P LE +S+ C L+ GLM IG D T ++F T K ++ A LSMGMS DFELAI G+ +RIGS +F Sbjct: 120 LNALLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTTTKKLFDQIKNA-------SVLSMGMSDDFELAIACGANLLRIGSFLF 220
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: YGGS_ECOLI (UPF0001 protein yggS OS=Escherichia coli (strain K12) GN=yggS PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.684e-12 Identity = 49/118 (41.53%), Postives = 62/118 (52.54%), Query Frame = -1 Query: 196 PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD---LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 540 PL VL+Q+N S E SKSG++ + EL V++ P L GLM I P+ E + R G+ LS+GMS D E AI GST VRIG+ IFGAR+Y KK Sbjct: 122 PLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: YGGS_ECOL6 (UPF0001 protein yggS OS=Escherichia coli O6 GN=yggS PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.684e-12 Identity = 49/118 (41.53%), Postives = 62/118 (52.54%), Query Frame = -1 Query: 196 PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD---LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 540 PL VL+Q+N S E SKSG++ + EL V++ P L GLM I P+ E + R G+ LS+GMS D E AI GST VRIG+ IFGAR+Y KK Sbjct: 122 PLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: YGGS_ECO57 (UPF0001 protein yggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.684e-12 Identity = 49/118 (41.53%), Postives = 62/118 (52.54%), Query Frame = -1 Query: 196 PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD---LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 540 PL VL+Q+N S E SKSG++ + EL V++ P L GLM I P+ E + R G+ LS+GMS D E AI GST VRIG+ IFGAR+Y KK Sbjct: 122 PLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: Y395_HELPY (UPF0001 protein HP_0395 OS=Helicobacter pylori GN=HP_0395 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.684e-12 Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = -1 Query: 220 LKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 537 L L+QVN++ EESKSGV P LE+ +S+ C +L+ GLM IG D ++F T K ++ A LSMGMS DFELAI G+ +RIGS +F Sbjct: 120 LNALLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFITTKKLFDQIKNA-------SVLSMGMSDDFELAIACGANLLRIGSFLF 220
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: Y394_PSEAE (UPF0001 protein PA0394 OS=Pseudomonas aeruginosa GN=PA0394 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12 Identity = 51/116 (43.97%), Postives = 62/116 (53.45%), Query Frame = -1 Query: 205 GRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKA-LGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 549 G PL V +QVN SGE SKSG P L + V Q PNL GLM I P ++ A+ R + LG+ LSMGMS D E AI G+T VRIG+ +FGAR+Y Sbjct: 116 GLPPLNVCLQVNVSGEASKSGCAPEDLPALAEAVKQ-LPNLRLRGLMAIPEPTAERAAQH-AAFARLRELLLDLNLGLDT----LSMGMSDDLEAAIGEGATWVRIGTALFGARDY 225 The following BLAST results are available for this feature:
BLAST of DC887412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DC887412 ID=DC887412; Name=DC887412; organism=Citrus sinensis; type=EST; length=558bpback to top |