CN184582 | Citrus Genome Database

Overview


Name	CN184582
Unique Name	CN184582
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	555

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7880	contig	Csv1_Contig7880:54..608.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAC4_ARATH (Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 2.872e-81
Identity = 140/168 (83.33%), Postives = 156/168 (92.86%), Query Frame = 1

Query:    1 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            TVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HY+PGVP++LVGTKLDLR+DK +  DHPG VP+TT QGEEL+K IG+A YIECSSKTQQNVKAVFDAAIKVV+
Sbjct:   10 TVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAAIKVVL 177

[Close]

BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 8.358e-81
Identity = 140/168 (83.33%), Postives = 155/168 (92.26%), Query Frame = 1

Query:    1 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            TVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLDLR+DK +  DHPG VP+TT QGEEL+K IG+  YIECSSKTQQNVKAVFDAAIKVV+
Sbjct:   11 TVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178

[Close]

BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAC7_ORYSJ (Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 2.432e-80
Identity = 139/168 (82.74%), Postives = 156/168 (92.86%), Query Frame = 1

Query:    1 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            TVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HY+P VP+VLVGTKLDLREDK +  DHPGL P++TAQGEEL++ IGAA YIECSSKTQQNVK+VFD+AIKVV+
Sbjct:   11 TVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKLDLREDKQFFLDHPGLAPISTAQGEELKRMIGAAAYIECSSKTQQNVKSVFDSAIKVVL 178

[Close]

BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 4.148e-80
Identity = 139/168 (82.74%), Postives = 155/168 (92.26%), Query Frame = 1

Query:    1 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            TVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV  G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLDLR+DK +  DHPG VP+TTAQGEELRK I A  YIECSSK+QQNVKAVFDAAI+VV+
Sbjct:   11 TVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVL 178

[Close]

BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 4.148e-80
Identity = 137/168 (81.55%), Postives = 157/168 (93.45%), Query Frame = 1

Query:    1 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            TVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV+ +G T+NLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLVS+ASYENV KKW+PEL+HY+PGVP++LVGTKLDLR+DK + A+HPG VP++TAQGEEL+K IGA  YIECS+KTQQNVKAVFDAAIKVV+
Sbjct:   11 TVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVL 178

[Close]

BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 5.417e-80
Identity = 139/168 (82.74%), Postives = 154/168 (91.67%), Query Frame = 1

Query:    1 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            TVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV  G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLDLR+DK +  DHPG VP+TTAQGEEL+K IGA  YIECSSKTQ+NVK VFDAAI+VV+
Sbjct:   11 TVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVL 178

[Close]

BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAC2_ORYSJ (Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 2.059e-79
Identity = 140/168 (83.33%), Postives = 154/168 (91.67%), Query Frame = 1

Query:    1 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV  +G  VNLGLWDTAGQEDY+RLRPLSYRGAD+FVLAFSL+SRASYENVLKKW+PEL+ ++P VP+VLVGTKLDLR+ + YLADHP    +TTAQGEELRKQIGAA YIECSSKTQQN+KAVFD AIKVV+
Sbjct:   12 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDHRSYLADHPAASAITTAQGEELRKQIGAAAYIECSSKTQQNIKAVFDTAIKVVL 179

[Close]

BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAC2_ARATH (Rac-like GTP-binding protein ARAC2 OS=Arabidopsis thaliana GN=ARAC2 PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 2.689e-79
Identity = 136/168 (80.95%), Postives = 154/168 (91.67%), Query Frame = 1

Query:    1 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            TVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKW+PEL+HY+PG+P+VLVGTKLDLR+DK +L DHPG   +TTAQGEELRK IGA  Y+ECSSKTQQNVKAVFD AI+V +
Sbjct:   11 TVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVAL 178

[Close]

BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 4.586e-79
Identity = 137/168 (81.55%), Postives = 153/168 (91.07%), Query Frame = 1

Query:    1 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            TVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV  G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLDLR+DK +  DHPG VP+TT QGEEL+K IGA  YIECSSK+Q+NVK VFDAAI+VV+
Sbjct:   11 TVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 178

[Close]

BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAC13_GOSHI (Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 4.586e-79
Identity = 138/168 (82.14%), Postives = 154/168 (91.67%), Query Frame = 1

Query:    1 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            TVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HY+  VPVVLVGTKLDLR+DK +L DHPG  P++T+QGEEL+K IGA  YIECSSKTQQNVKAVFDAAIKV +
Sbjct:   11 TVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPELRHYAHNVPVVLVGTKLDLRDDKQFLIDHPGATPISTSQGEELKKMIGAVTYIECSSKTQQNVKAVFDAAIKVAL 178

The following BLAST results are available for this feature:

BLAST of CN184582 vs. ExPASy Swiss-Prot

BLAST of CN184582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RAC4_ARATH	2.872e-81	83.33	Rac-like GTP-binding protein ARAC4 OS=Arabidopsis ...	[more]
RAC5_ARATH	8.358e-81	83.33	Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ...	[more]
RAC7_ORYSJ	2.432e-80	82.74	Rac-like GTP-binding protein 7 OS=Oryza sativa sub...	[more]
RHO1_PEA	4.148e-80	82.74	Rac-like GTP-binding protein RHO1 OS=Pisum sativum...	[more]
RAC3_ARATH	4.148e-80	81.55	Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ...	[more]
RAC1_ARATH	5.417e-80	82.74	Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ...	[more]
RAC2_ORYSJ	2.059e-79	83.33	Rac-like GTP-binding protein 2 OS=Oryza sativa sub...	[more]
RAC2_ARATH	2.689e-79	80.95	Rac-like GTP-binding protein ARAC2 OS=Arabidopsis ...	[more]
RAC6_ARATH	4.586e-79	81.55	Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ...	[more]
RAC13_GOSHI	4.586e-79	82.14	Rac-like GTP-binding protein RAC13 OS=Gossypium hi...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS04_0005L21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L21, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN184582 ID=CN184582; Name=CN184582; organism=Citrus sinensis; type=EST; length=555bp
ACAGTTGGTGATGGGGCTGTTGGCAAAACTTGCATGCTTATTTGCTACAC
AAGTAACAAGTTTCCTACTGATTATATACCAACGGTGTTCGACAACTTCA
GTGCAAATGTGGTAGCTGAAGGCACTACTGTCAACTTAGGCCTCTGGGAC
ACAGCTGGGCAAGAGGATTACAATAGATTAAGGCCTTTGAGCTACAGAGG
GGCAGACGTTTTTGTCTTAGCTTTCTCATTAGTCAGTCGAGCCAGCTATG
AAAACGTTCTAAAAAAGTGGATCCCTGAACTTCAGCATTACTCTCCCGGA
GTACCAGTTGTATTGGTTGGCACCAAATTGGATCTTCGAGAGGATAAGCA
TTATTTGGCTGATCATCCAGGATTGGTGCCTGTGACCACTGCACAAGGAG
AGGAACTCCGTAAACAGATTGGTGCTGCATATTACATTGAATGCAGCTCG
AAAACTCAGCAGAATGTAAAAGCAGTTTTTGATGCTGCAATCAAGGTAGT
TATCAAACCCCCGCAGAAGCAAAAGGAGAAGAAGAAAAAACAACCGAGGA
TGCCT