CN184582

Overview
NameCN184582
Unique NameCN184582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RND3_PONAB (Rho-related GTP-binding protein RhoE OS=Pongo abelii GN=RND3 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.552e-29
Identity = 65/165 (39.39%), Postives = 101/165 (61.21%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGAAYYIECSS-KTQQNVKAVFDAA 489
            VGD   GKT +L  +  + FP +Y+PTVF+N++A+   +   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DLR D   L +  +    PV+  QG  + KQIGAA YIECS+ +++ +V+ +F  A
Sbjct:   29 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RND3_MOUSE (Rho-related GTP-binding protein RhoE OS=Mus musculus GN=Rnd3 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.552e-29
Identity = 65/165 (39.39%), Postives = 101/165 (61.21%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGAAYYIECSS-KTQQNVKAVFDAA 489
            VGD   GKT +L  +  + FP +Y+PTVF+N++A+   +   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DLR D   L +  +    PV+  QG  + KQIGAA YIECS+ +++ +V+ +F  A
Sbjct:   29 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RND3_HUMAN (Rho-related GTP-binding protein RhoE OS=Homo sapiens GN=RND3 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.552e-29
Identity = 65/165 (39.39%), Postives = 101/165 (61.21%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGAAYYIECSS-KTQQNVKAVFDAA 489
            VGD   GKT +L  +  + FP +Y+PTVF+N++A+   +   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DLR D   L +  +    PV+  QG  + KQIGAA YIECS+ +++ +V+ +F  A
Sbjct:   29 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHO3_ASHGO (GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO3 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.333e-29
Identity = 71/182 (39.01%), Postives = 98/182 (53.85%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY---LADHPGLVP------------VTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            +GDGA GKT +L  +T   FP  Y PTVF+N+  ++  +   + L LWDTAGQE+++RLR LSY      +L FS+ SR S ENV  KW+ E+  +  GV +VLV  K DLR    Y    A  PG +             +   +G  + KQIGA  Y+ECS+K  + V   F  A +  +
Sbjct:   21 LGDGACGKTSLLNVFTRGYFPKVYEPTVFENYIHDIFVDNQHITLSLWDTAGQEEFDRLRSLSYSDTHTIMLCFSVDSRDSLENVKNKWVSEIADHCEGVKLVLVALKCDLRSSDEYGNESAITPGSIQNQKYNGGGGNGLIPYDEGLAMAKQIGALRYLECSAKMNRGVNEAFTEAARCAL 202          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RND3_PIG (Rho-related GTP-binding protein RhoE OS=Sus scrofa GN=RND3 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.685e-29
Identity = 64/165 (38.79%), Postives = 101/165 (61.21%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGAAYYIECSS-KTQQNVKAVFDAA 489
            VGD   G+T +L  +  + FP +Y+PTVF+N++A+   +   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DLR D   L +  +    PV+  QG  + KQIGAA YIECS+ +++ +V+ +F  A
Sbjct:   29 VGDSQCGRTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHO3_SCHCO (GTP-binding protein Rho3 OS=Schizophyllum commune GN=RHO3 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.685e-28
Identity = 71/161 (44.10%), Postives = 96/161 (59.63%), Query Frame = 1
Query:    7 GDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE---LRKQIGAAYYIECSSKTQQNVKAVF 480
            GDGA GKT +L  +T   F   Y PTVF+N+  ++  +   V L LWDTAGQE+++RLR LSY    V ++ FS+ +  S ENV  KW+ E+  Y PGV +VLV +K DLR+D   L D        T Q EE   + ++I A+ Y+ECSSK  + V  VF
Sbjct:   24 GDGACGKTSLLNVFTRGFFTQVYEPTVFENYVHDLYIDDQLVELSLWDTAGQEEFDRLRSLSYAETHVIMICFSVDNPTSLENVESKWLDEILEYCPGVKLVLVDSKCDLRDDPAVL-DRLQRYGTHTDQYEEGLGVARRIRASRYLECSSKHNRGVNEVF 183          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHO3_YEAST (GTP-binding protein RHO3 OS=Saccharomyces cerevisiae GN=RHO3 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.072e-27
Identity = 70/190 (36.84%), Postives = 100/190 (52.63%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR---------------EDKHYLADHPGLVPVTT--------AQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            +GDGA GKT +L  +T   FP  Y PTVF+N+  ++  +   + L LWDTAGQE+++RLR LSY      +L FS+ SR S ENV  KW+ E+  +  GV +VLV  K DLR               +D     D+   +  T+         +G  + K+IGA  Y+ECS+K  + V   F  A +V +
Sbjct:   22 LGDGACGKTSLLNVFTRGYFPEVYEPTVFENYIHDIFVDSKHITLSLWDTAGQEEFDRLRSLSYSDTQCIMLCFSIDSRDSLENVQNKWVGEITDHCEGVKLVLVALKCDLRNNENESNAITPNNIQQDNSVSNDNGNNINSTSNGKNLISYEEGLAMAKKIGALRYLECSAKLNKGVNEAFTEAARVAL 211          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RACN_DICDI (Rho-related protein racN OS=Dictyostelium discoideum GN=racN PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.504e-26
Identity = 63/160 (39.38%), Postives = 92/160 (57.50%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFD 483
            +GD  +GKT +L+      FP +YIPT+FDN    +      + +G WDT G E+Y R  PLSY   ++F++ FS+ SR S+ N    W+PE+  + P VP++LVGTK DLR    Y         VT  +G E++ +I A+ Y+ECSS   + V  +FD
Sbjct:   11 LGDVTIGKTSLLVTKKIG-FPLEYIPTIFDNHYFEIKINDQIMRIGCWDTGGGEEYPR--PLSYPQTNLFLILFSISSRNSFNNCETYWLPEVTKFLPSVPIILVGTKTDLRNCDDY---KDKSTFVTYEEGLEMKDKINASAYLECSSLLNKGVDDLFD 164          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RND1_BOVIN (Rho-related GTP-binding protein Rho6 OS=Bos taurus GN=RND1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.883e-26
Identity = 63/170 (37.06%), Postives = 96/170 (56.47%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGAAYYIECSSKT-QQNVKAVFDAAIKVVI 504
            VGD   GKT ML     + +P  Y+PTVF+N++A +  E   V L LWDT+G   Y+ +RPL Y  +D  +L F +    + ++ LKKW  E+  Y P   V+L+G K DLR D   L +  H    P++  QG  + KQ+GA  Y+E S+ T ++++ ++F  A  V +
Sbjct:   19 VGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMVCL 188          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RND1_MOUSE (Rho-related GTP-binding protein Rho6 OS=Mus musculus GN=Rnd1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.683e-26
Identity = 63/170 (37.06%), Postives = 95/170 (55.88%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQ-NVKAVFDAAIKVVI 504
            VGD   GKT ML     + +P  Y+PTVF+N++A +  E   V L LWDT+G   Y+ +RPL Y  +D  +L F +    + ++ LKKW  E+  Y P   V+L+G K DLR D   L +  H    P++  QG  + KQ+GA  Y+E S+ T + ++ ++F  A  V +
Sbjct:   19 VGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETMDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSETSIHSIFRTASMVCL 188          
The following BLAST results are available for this feature:
BLAST of CN184582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RND3_PONAB2.552e-2939.39Rho-related GTP-binding protein RhoE OS=Pongo abel... [more]
RND3_MOUSE2.552e-2939.39Rho-related GTP-binding protein RhoE OS=Mus muscul... [more]
RND3_HUMAN2.552e-2939.39Rho-related GTP-binding protein RhoE OS=Homo sapie... [more]
RHO3_ASHGO3.333e-2939.01GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO... [more]
RND3_PIG5.685e-2938.79Rho-related GTP-binding protein RhoE OS=Sus scrofa... [more]
RHO3_SCHCO3.685e-2844.10GTP-binding protein Rho3 OS=Schizophyllum commune ... [more]
RHO3_YEAST1.072e-2736.84GTP-binding protein RHO3 OS=Saccharomyces cerevisi... [more]
RACN_DICDI4.504e-2639.38Rho-related protein racN OS=Dictyostelium discoide... [more]
RND1_BOVIN5.883e-2637.06Rho-related GTP-binding protein Rho6 OS=Bos taurus... [more]
RND1_MOUSE7.683e-2637.06Rho-related GTP-binding protein Rho6 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184582 ID=CN184582; Name=CN184582; organism=Citrus sinensis; type=EST; length=555bp
ACAGTTGGTGATGGGGCTGTTGGCAAAACTTGCATGCTTATTTGCTACAC
AAGTAACAAGTTTCCTACTGATTATATACCAACGGTGTTCGACAACTTCA
GTGCAAATGTGGTAGCTGAAGGCACTACTGTCAACTTAGGCCTCTGGGAC
ACAGCTGGGCAAGAGGATTACAATAGATTAAGGCCTTTGAGCTACAGAGG
GGCAGACGTTTTTGTCTTAGCTTTCTCATTAGTCAGTCGAGCCAGCTATG
AAAACGTTCTAAAAAAGTGGATCCCTGAACTTCAGCATTACTCTCCCGGA
GTACCAGTTGTATTGGTTGGCACCAAATTGGATCTTCGAGAGGATAAGCA
TTATTTGGCTGATCATCCAGGATTGGTGCCTGTGACCACTGCACAAGGAG
AGGAACTCCGTAAACAGATTGGTGCTGCATATTACATTGAATGCAGCTCG
AAAACTCAGCAGAATGTAAAAGCAGTTTTTGATGCTGCAATCAAGGTAGT
TATCAAACCCCCGCAGAAGCAAAAGGAGAAGAAGAAAAAACAACCGAGGA
TGCCT
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