CN184582

Overview
NameCN184582
Unique NameCN184582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVF 480
            +GD  VGK+C+L+ +T  +F   +  T+   F A ++  +G  + L +WDTAGQE +  +    YRGA   +L + +  R ++ N L  W+ +  QH +  + ++L+G K DL   +           V   +GE   ++ G   ++E S+KT  NV+  F
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLIGNKSDLESRRE----------VKKEEGEAFAREHG-LIFMETSAKTASNVEEAF 160          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVF 480
            +GD  VGK+C+L+ +T  +F   +  T+   F A ++  +G  + L +WDTAGQE +  +    YRGA   +L + +  R ++ N L  W+ +  QH +  + ++L+G K DL   +           V   +GE   ++ G   ++E S+KT  NV+  F
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLIGNKSDLESRRE----------VKKEEGEAFAREHG-LIFMETSAKTASNVEEAF 160          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVF 480
            +GD  VGK+C+L+ +T  +F   +  T+   F A ++  +G  + L +WDTAGQE +  +    YRGA   +L + +  R ++ N L  W+ +  QH +  + ++L+G K DL   +           V   +GE   ++ G   ++E S+KT  NV+  F
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLIGNKSDLESRRE----------VKKEEGEAFAREHG-LIFMETSAKTASNVEEAF 160          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVF 480
            +GD  VGK+C+L+ +T  +F   +  T+   F A ++  +G  + L +WDTAGQE +  +    YRGA   +L + +  R ++ N L  W+ +  QH +  + ++L+G K DL   +           V   +GE   ++ G   ++E S+KT  NV+  F
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLIGNKSDLESRRE----------VKKEEGEAFAREHG-LIFMETSAKTASNVEEAF 160          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 49/169 (28.99%), Postives = 87/169 (51.48%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            +GD  VGKTC++  + S  +      T+  +F+   +  +G  V + +WDTAGQE +  +    YR A   ++A+ L  R+++E++   WI E++ Y +  V ++L+G K DL E +H L +              L ++ G    +E S+K  +N++ VF    K +I
Sbjct:   23 IGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESI-PHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFE----------DACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELI 180          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAB18_CAEEL (Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 50/170 (29.41%), Postives = 89/170 (52.35%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            +G+  VGK+ +++ +  + F  +   T+  +F    +A +G  V L +WDTAGQE +  L P  YRGA   +  + + SR+S+E  L  W+ E+  Y  +  +  ++V  K+D+          P  V VT  +G +  K+     +IE S+KT++ V+  F+  I+ +I
Sbjct:   17 IGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEK-LNHWMQEVDTYCTNDNIIKMMVANKIDM----------PNRV-VTREEGLKFAKR-HRTLFIEASAKTKEGVQCTFEELIEKII 173          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: LET60_CAEEL (Ras protein let-60 OS=Caenorhabditis elegans GN=let-60 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 336
            VGDG VGK+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+L F++    S+ENV   ++ I  ++  S  VP+VLVG K DL
Sbjct:    9 VGDGGVGKSALTIQLIQNHFVEEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNEAKSFENVANYREQIRRVKD-SDDVPMVLVGNKCDL 120          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 50/170 (29.41%), Postives = 88/170 (51.76%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV--LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            +G+  VGK+ +L+ +T + F  +   T+  +F    +A +G    L +WDTAGQE +  L P  YRGA   +L + +  R ++   L+ W+ EL+ Y     +V  LVG K+D  +D   +  + GL        +  RK   +  +IE S+KT+  V+  F+  ++ ++
Sbjct:   14 IGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTK-LENWLNELETYCTRNDLVKMLVGNKID--KDNREVDRNEGL--------KFARKH--SMLFIEASAKTRDGVQCAFEELVEKIL 170          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAS_LACBI (Ras-like protein OS=Laccaria bicolor PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 49/161 (30.43%), Postives = 87/161 (54.04%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL--KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVF 480
            VG G  GK+C+ I    + F  +Y PT+ +++    V +     L + DTAGQE+Y+ +R    R  + F+L +S+ SR S+E ++  ++ I  ++      P+++VG K DL +++           V+  +GE L +Q G   +IE S+K++ NV+  F
Sbjct:   14 VGGGGEGKSCLTIQLIQSHFVDEYDPTIEESYRKQCVIDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKD-KDYFPIIVVGNKCDLDKER----------VVSKQEGESLARQFGCK-FIETSAKSRINVENAF 162          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RASH_MSVHA (Transforming protein p29 OS=Harvey murine sarcoma virus GN=H-RAS PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 53/168 (31.55%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVV 501
            VG   VGK+ + I    N F  +Y PT+ D++   VV +G T  L + DT GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L +  G   YIE S+KT+Q V+  F   ++ +
Sbjct:   61 VGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDLAGR-----------TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 215          
The following BLAST results are available for this feature:
BLAST of CN184582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_MACFA1.775e-1429.81Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN1.775e-1429.81Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK1.775e-1429.81Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA1.775e-1429.81Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB19_HUMAN1.775e-1428.99Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RAB18_CAEEL1.775e-1429.41Ras-related protein Rab-18 OS=Caenorhabditis elega... [more]
LET60_CAEEL1.775e-1440.71Ras protein let-60 OS=Caenorhabditis elegans GN=le... [more]
RB18B_DANRE2.319e-1429.41Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
RAS_LACBI2.319e-1430.43Ras-like protein OS=Laccaria bicolor PE=2 SV=1[more]
RASH_MSVHA2.319e-1431.55Transforming protein p29 OS=Harvey murine sarcoma ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184582 ID=CN184582; Name=CN184582; organism=Citrus sinensis; type=EST; length=555bp
ACAGTTGGTGATGGGGCTGTTGGCAAAACTTGCATGCTTATTTGCTACAC
AAGTAACAAGTTTCCTACTGATTATATACCAACGGTGTTCGACAACTTCA
GTGCAAATGTGGTAGCTGAAGGCACTACTGTCAACTTAGGCCTCTGGGAC
ACAGCTGGGCAAGAGGATTACAATAGATTAAGGCCTTTGAGCTACAGAGG
GGCAGACGTTTTTGTCTTAGCTTTCTCATTAGTCAGTCGAGCCAGCTATG
AAAACGTTCTAAAAAAGTGGATCCCTGAACTTCAGCATTACTCTCCCGGA
GTACCAGTTGTATTGGTTGGCACCAAATTGGATCTTCGAGAGGATAAGCA
TTATTTGGCTGATCATCCAGGATTGGTGCCTGTGACCACTGCACAAGGAG
AGGAACTCCGTAAACAGATTGGTGCTGCATATTACATTGAATGCAGCTCG
AAAACTCAGCAGAATGTAAAAGCAGTTTTTGATGCTGCAATCAAGGTAGT
TATCAAACCCCCGCAGAAGCAAAAGGAGAAGAAGAAAAAACAACCGAGGA
TGCCT
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