CN184582

Overview
NameCN184582
Unique NameCN184582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVF 480
            +GD  VGK+C+L+ +  + +   +I T+  +F    +   G T+ L +WDTAGQE +  +    YRGA   ++ + +  + ++ENV ++W+ E+  ++   V  +LVG K DL   K        +V   TA+      QI    ++E S+K   NV+  F
Sbjct:   14 IGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENV-RQWLQEIDRFACENVNKLLVGNKSDLVAKK--------VVDFNTAKAFADSLQIP---FLETSAKQSTNVEQAF 162          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAS_BOTFU (Ras-like protein OS=Botryotinia fuckeliana GN=ras1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL--KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVF 480
            VG G VGK+C+ I    + F  +Y PT+ D++    V +     L + DTAGQE+Y+ +R    R  + F+L +S+ SR S+E ++  ++ I  ++      P+++VG K DL  ++           V+  +G++L    G   +IE S+K++ NV   F
Sbjct:   14 VGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRKQCVIDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKD-KDYFPIIVVGNKCDLEGERQ----------VSKQEGQQLADDFGCK-FIETSAKSRINVDNAF 162          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RALA_HUMAN (Ras-related protein Ral-A OS=Homo sapiens GN=RALA PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVF 480
            VG G VGK+ + + +  ++F  DY PT  D++   VV +G  V + + DTAGQEDY  +R   +R  + F+  FS+    S+      ++ I  ++     VP +LVG K DL EDK  +          + +  + R +     Y+E S+KT+ NV  VF
Sbjct:   20 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDL-EDKRQV----------SVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 48/166 (28.92%), Postives = 79/166 (47.59%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIK 495
            +G+ AVGK+ +++ +   +F      T+   F    V  + TTV   +WDTAGQE Y+ L P+ YRGA   ++ + + +  ++    K W+ ELQ   SP + + L G K DL   +               Q  +   +  +  ++E S+KT  NV  +F A  K
Sbjct:   27 LGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLASKR-----------AVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAK 180          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVF 480
            +GD  VGK+C+L+ +T  +F   +  T+   F A ++  +G  + L +WDTAGQE +  +    YRGA   +L + +  R ++ N L  W+ +  QH +  + ++L+G K DL   +           V   +GE   ++ G   ++E S+KT  NV+  F
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLIGNKSDLEARRE----------VKKEEGEAFAREHG-LIFMETSAKTAANVEEAF 160          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVF 480
            +GD  VGK+C+L+ +T  +F   +  T+   F A +V  +G  + L +WDTAGQE +  +    YRGA   +L + +  R ++ N L  W+ +  QH S  + ++L+G K DL   +           V   +GE   ++ G   ++E S+KT  NV+  +
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR----------DVKREEGEAFAREHG-LIFMETSAKTACNVEEAY 160          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVF 480
            +GD  VGK+C+L+ +T  +F   +  T+   F A ++  +G  + L +WDTAGQE +  +    YRGA   +L + +  R ++ N L  W+ +  QH +  + ++L+G K DL   +           V   +GE   ++ G   ++E S+KT  NV+  F
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLIGNKSDLESRRE----------VKKEEGEAFAREHG-LIFMETSAKTASNVEEAF 160          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.955e-14
Identity = 50/161 (31.06%), Postives = 85/161 (52.80%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVF 480
            +G+ AVGK+ +++ + SN F  +  PT+   F +  V     TV   +WDTAGQE +  L P+ YR A   ++ + +    S+    + W+ EL +  S  + + LVG K+D+ ++        G   V   +GE+L ++ G  ++ E S+KT +NV  VF
Sbjct:   13 LGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDMLQE-------GGERKVAREEGEKLAEEKGLLFF-ETSAKTGENVNDVF 164          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHEB_YEAST (Rheb-like protein RHB1 OS=Saccharomyces cerevisiae GN=RHB1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.955e-14
Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA------AYYIECSSKTQQNVKAVFDAAIK 495
            +G   VGKT + + +  ++F   Y PT+ + F+  +  +     L + DTAGQ++ + L   S  G    +L +S+++RAS++ +   W   + Q     +PV+LVGTK DL      +        VT A+GE+L   IG+      A +IECS++   NV+  F   +K
Sbjct:   22 IGARNVGKTTLTVRFVESRFVESYYPTIENEFTRIIPYKSHDCTLEILDTAGQDEVSLLNIKSLTGVRGIILCYSIINRASFDLIPILWDKLVDQLGKDNLPVILVGTKADLGRSTKGVKR-----CVTKAEGEKLASTIGSQDKRNQAAFIECSAELDYNVEETFMLLLK 187          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RB27A_RAT (Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.955e-14
Identity = 55/180 (30.56%), Postives = 83/180 (46.11%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-----------VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            +GD  VGKT +L  YT  KF + +I TV  +F               V  G  ++L LWDTAGQE +  L    +R A  F+L F L +  S+ NV + WI +LQ   Y     +VL G K DL + +           V   +  EL ++ G  Y+ E S+    N+    +  + +++
Sbjct:   15 LGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGTVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR----------AVKEEEARELAEKYGIPYF-ETSAANGTNISQAIEMLLDLIM 182          
The following BLAST results are available for this feature:
BLAST of CN184582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1A_DICDI2.319e-1429.81Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAS_BOTFU3.028e-1430.43Ras-like protein OS=Botryotinia fuckeliana GN=ras1... [more]
RALA_HUMAN3.028e-1432.30Ras-related protein Ral-A OS=Homo sapiens GN=RALA ... [more]
RAB5C_BOVIN3.028e-1428.92Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB2_LYMST3.028e-1429.81Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2B_MOUSE3.028e-1430.43Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2A_RAT3.028e-1429.81Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
VPS21_YEAST3.955e-1431.06Vacuolar protein sorting-associated protein 21 OS=... [more]
RHEB_YEAST3.955e-1430.41Rheb-like protein RHB1 OS=Saccharomyces cerevisiae... [more]
RB27A_RAT3.955e-1430.56Ras-related protein Rab-27A OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184582 ID=CN184582; Name=CN184582; organism=Citrus sinensis; type=EST; length=555bp
ACAGTTGGTGATGGGGCTGTTGGCAAAACTTGCATGCTTATTTGCTACAC
AAGTAACAAGTTTCCTACTGATTATATACCAACGGTGTTCGACAACTTCA
GTGCAAATGTGGTAGCTGAAGGCACTACTGTCAACTTAGGCCTCTGGGAC
ACAGCTGGGCAAGAGGATTACAATAGATTAAGGCCTTTGAGCTACAGAGG
GGCAGACGTTTTTGTCTTAGCTTTCTCATTAGTCAGTCGAGCCAGCTATG
AAAACGTTCTAAAAAAGTGGATCCCTGAACTTCAGCATTACTCTCCCGGA
GTACCAGTTGTATTGGTTGGCACCAAATTGGATCTTCGAGAGGATAAGCA
TTATTTGGCTGATCATCCAGGATTGGTGCCTGTGACCACTGCACAAGGAG
AGGAACTCCGTAAACAGATTGGTGCTGCATATTACATTGAATGCAGCTCG
AAAACTCAGCAGAATGTAAAAGCAGTTTTTGATGCTGCAATCAAGGTAGT
TATCAAACCCCCGCAGAAGCAAAAGGAGAAGAAGAAAAAACAACCGAGGA
TGCCT
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