CN184582

Overview
NameCN184582
Unique NameCN184582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7880 contig Csv1_Contig7880:54..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 53/168 (31.55%), Postives = 81/168 (48.21%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVV 501
            +G+  VGKT +L  +T N+F  D   T+   FS   V  GT  V   +WDTAG E Y  +    YRGA   +L F L    +Y  V+++W+ EL  H    + V+LVG K DL + +         VP   A+   +  +     ++E S+    NV+  F+  +K +
Sbjct:   18 IGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQARE--------VPTEEAR---MFAENNGLLFLETSALDSTNVELAFETVLKEI 173          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 53/168 (31.55%), Postives = 81/168 (48.21%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVV 501
            +G+  VGKT +L  +T N+F  D   T+   FS   V  GT  V   +WDTAG E Y  +    YRGA   +L F L    +Y  V+++W+ EL  H    + V+LVG K DL + +         VP   A+   +  +     ++E S+    NV+  F+  +K +
Sbjct:   18 IGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQARE--------VPTEEAR---MFAENNGLLFLETSALDSTNVELAFETVLKEI 173          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAB12_MOUSE (Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 48/161 (29.81%), Postives = 78/161 (48.45%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVF 480
            +G   VGKT ++  +T + F      TV  +F    V   G  + L +WDTAGQE +N +    YR A   +L + +  + ++++ L KW+  +  Y S    ++LVG KLD   D+           ++  QGE+  +QI    + E S+K   NV  +F
Sbjct:   47 IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 196          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 51/165 (30.91%), Postives = 84/165 (50.91%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAI 492
            +GD AVGK+ +L  Y  N+F  +   T+   F   ++  EG  V   +WDTAGQE +  +    YRGA   ++ + +  R ++E+V  +W+ EL+ H    V  +LVG K DL            +  V+  +G+ L ++ G  +++E S+    NVK  F+  I
Sbjct:   18 IGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESV-GRWLDELKIHSDTTVARMLVGNKCDLE----------NIRAVSVEEGKALAEEEG-LFFVETSALDSTNVKTAFEMVI 170          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13
Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVF 480
            +GD  VGK+ +L  +T N+F  +   T+   F+  ++  +G T+   +WDTAGQE Y  +    YRGA   +L + +    ++ENV ++W+ EL+ H    + ++LVG K DL+           L  V T   +   ++ G + +IE S+    NV+  F
Sbjct:   18 IGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENV-ERWLKELRDHADSNIVIMLVGNKSDLKH----------LRDVQTEVAQAFCEREGLS-FIETSALESTNVEKAF 166          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13
Identity = 48/165 (29.09%), Postives = 81/165 (49.09%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAI 492
            +GD  VGK+ +L+ +T N+F  +   T+   F+  N+V +   +   +WDTAGQE Y  +    YRGA   ++ + +  ++S++NV  +W+ EL +H    + ++LVG K DL         H   V    AQ       +    +IE S+    NV+  F   +
Sbjct:   16 IGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNV-GRWLKELREHADSNIVIMLVGNKTDLL--------HLRAVSTEEAQAFAAENNLS---FIETSAMDASNVEEAFQTVL 168          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RRAS_MOUSE (Ras-related protein R-Ras OS=Mus musculus GN=Rras PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13
Identity = 48/167 (28.74%), Postives = 77/167 (46.11%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVV 501
            VG G VGK+ + I +  + F +DY PT+ D+++     +G    L + DTAGQE++  +R    R  + F+L F++  R S+  V K +   L+       P+VLVG K DL   +  L         +               Y E S+K + NV   F+  ++ V
Sbjct:   35 VGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICTVDGIPARLDILDTAGQEEFGAMREQYMRAGNGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPIVLVGNKADLENQRQVLRSEASSFSASHHM-----------TYFEASAKLRLNVDEAFEQLVRAV 190          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RB27A_PIG (Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13
Identity = 56/180 (31.11%), Postives = 85/180 (47.22%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-----------VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            +GD  VGKT +L  YT  KF + +I TV  +F               +  G  ++L LWDTAGQE +  L    +R A  F+L F L +  S+ NV + WI +LQ   Y     +VL G K DL + +        +V    A+G  L ++ G  Y+ E S+    NV    +  + +++
Sbjct:   15 LGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR--------VVKEEEARG--LAEKYGIPYF-ETSAANGTNVSLAIETLLDLIM 182          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RAS_ARTSA (Ras-like protein (Fragment) OS=Artemia salina PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13
Identity = 51/165 (30.91%), Postives = 86/165 (52.12%), Query Frame = 1
Query:   13 GAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVV 501
            G VGK+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+L F++ +  S+E++   ++ I  ++  +  VP+VLVG K DL               V  +Q  E+ +Q G   ++E S+KT+  V   F   ++ +
Sbjct:    1 GGVGKSALTIQLIQNHFVDEYDPTIEDSYRQQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNNAKSFEDISAYREQIKRVKD-AEEVPMVLVGNKCDLPTR-----------AVDMSQAREVARQYGIP-FVETSAKTRMGVDDGFYTLVREI 152          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RASK_XENLA (GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13
Identity = 53/168 (31.55%), Postives = 86/168 (51.19%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVV 501
            VG   VGK+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K  L               V T Q ++L +  G   +IE S+KT+Q V   F   ++ +
Sbjct:    9 VGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCALPSR-----------TVDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 163          
The following BLAST results are available for this feature:
BLAST of CN184582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_RABIT1.503e-1331.55Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RAB25_HUMAN1.503e-1331.55Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB12_MOUSE1.503e-1329.81Ras-related protein Rab-12 OS=Mus musculus GN=Rab1... [more]
ARA1_ARATH1.503e-1330.91Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
YPTC6_CHLRE1.963e-1330.43Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
YPT3_SCHPO1.963e-1329.09GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RRAS_MOUSE1.963e-1328.74Ras-related protein R-Ras OS=Mus musculus GN=Rras ... [more]
RB27A_PIG1.963e-1331.11Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27... [more]
RAS_ARTSA1.963e-1330.91Ras-like protein (Fragment) OS=Artemia salina PE=3... [more]
RASK_XENLA1.963e-1331.55GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184582 ID=CN184582; Name=CN184582; organism=Citrus sinensis; type=EST; length=555bp
ACAGTTGGTGATGGGGCTGTTGGCAAAACTTGCATGCTTATTTGCTACAC
AAGTAACAAGTTTCCTACTGATTATATACCAACGGTGTTCGACAACTTCA
GTGCAAATGTGGTAGCTGAAGGCACTACTGTCAACTTAGGCCTCTGGGAC
ACAGCTGGGCAAGAGGATTACAATAGATTAAGGCCTTTGAGCTACAGAGG
GGCAGACGTTTTTGTCTTAGCTTTCTCATTAGTCAGTCGAGCCAGCTATG
AAAACGTTCTAAAAAAGTGGATCCCTGAACTTCAGCATTACTCTCCCGGA
GTACCAGTTGTATTGGTTGGCACCAAATTGGATCTTCGAGAGGATAAGCA
TTATTTGGCTGATCATCCAGGATTGGTGCCTGTGACCACTGCACAAGGAG
AGGAACTCCGTAAACAGATTGGTGCTGCATATTACATTGAATGCAGCTCG
AAAACTCAGCAGAATGTAAAAGCAGTTTTTGATGCTGCAATCAAGGTAGT
TATCAAACCCCCGCAGAAGCAAAAGGAGAAGAAGAAAAAACAACCGAGGA
TGCCT
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