CN184582

Overview
NameCN184582
Unique NameCN184582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7880 contig Csv1_Contig7880:54..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHOC_MOUSE (Rho-related GTP-binding protein RhoC OS=Mus musculus GN=Rhoc PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.377e-43
Identity = 80/166 (48.19%), Postives = 118/166 (71.08%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIK 495
            VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR+D+H   +   +   PV + +G ++  +I A  Y+ECS+KT++ V+ VF+ A +
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 176          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHOC_HUMAN (Rho-related GTP-binding protein RhoC OS=Homo sapiens GN=RHOC PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.377e-43
Identity = 80/166 (48.19%), Postives = 118/166 (71.08%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIK 495
            VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR+D+H   +   +   PV + +G ++  +I A  Y+ECS+KT++ V+ VF+ A +
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 176          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHOC_BOVIN (Rho-related GTP-binding protein RhoC OS=Bos taurus GN=RHOC PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.377e-43
Identity = 80/166 (48.19%), Postives = 118/166 (71.08%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIK 495
            VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR+D+H   +   +   PV + +G ++  +I A  Y+ECS+KT++ V+ VF+ A +
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 176          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHOA_EMENI (GTP-binding protein rhoA OS=Emericella nidulans GN=rhoA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.377e-43
Identity = 84/169 (49.70%), Postives = 117/169 (69.23%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            VGDGA GKTC+LI ++   FP  Y+PTVF+N+ A+V  +G  V L LWDTAGQEDY+RLRPLSY  + V ++ F++ S  S +NV +KWI E+ H+  G+P++LVG K DLR D   + +       PVT  QGEE+RK+IGA  Y+ECS++T + V+ VF+AA +  +
Sbjct:   11 VGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCQGLPIILVGCKKDLRHDPKTIEELNKTSQKPVTPEQGEEVRKKIGAYKYLECSARTNEGVREVFEAATRAAL 179          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHO1_ASHGO (GTP-binding protein RHO1 OS=Ashbya gossypii GN=RHO1 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.377e-43
Identity = 86/166 (51.81%), Postives = 114/166 (68.67%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIK 495
            VGDGA GKTC+LI +   KFP  Y+PTVFDN+ A+V  +G  V L LWDTAGQEDY+RLRPLSY  ++V ++ +S+    S ENV++KWI E+ ++  GVP++LVG K DLR D   +      G  PV+ AQ +E+  QIGA  YIECS+KT   V+ VF+AA +
Sbjct:   17 VGDGACGKTCLLIVFAKGKFPQVYVPTVFDNYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICYSIDLPDSLENVMEKWISEVLYFCQGVPIILVGCKADLRNDPQVIEQLRQQGQQPVSQAQAQEVADQIGAVEYIECSAKTGFGVREVFEAATR 182          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHO1_CAEEL (Ras-like GTP-binding protein rhoA OS=Caenorhabditis elegans GN=rho-1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.105e-43
Identity = 81/169 (47.93%), Postives = 116/169 (68.64%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D   + +   +   PV   QG  + +QIGA  Y+ECS+KT+  ++ VF+ A +  +
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKRDLRSDPQTVRELAKMKQEPVKPEQGRAIAEQIGAFAYLECSAKTKDGIREVFEKATQAAL 179          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHOC_CHICK (Rho-related GTP-binding protein RhoC OS=Gallus gallus GN=RHOC PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.917e-43
Identity = 80/166 (48.19%), Postives = 116/166 (69.88%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIK 495
            VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +I A  Y+ECS+KT++ V+ VF+ A +
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRINAFGYLECSAKTKEGVREVFEMATR 176          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHOU_HUMAN (Rho-related GTP-binding protein RhoU OS=Homo sapiens GN=RHOU PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.180e-42
Identity = 86/165 (52.12%), Postives = 118/165 (71.52%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAI 492
            VGDGAVGKT +++ YT+N +PT+YIPT FDNFSA V  +G  V L L DTAGQ+++++LRPL Y   D+F+L FS+VS +S++NV +KW+PE++ + P  P++LVGT+ DLRED   L   D     PV     +   ++I AA YIECS+ TQ+N+K VFDAAI
Sbjct:   55 VGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAAI 219          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHOB_RAT (Rho-related GTP-binding protein RhoB OS=Rattus norvegicus GN=Rhob PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.180e-42
Identity = 80/169 (47.34%), Postives = 116/169 (68.64%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE++H+ P VP++LV  K DLR D+H   +   +   PV T  G  +  +I A  Y+ECS+KT++ V+ VF+ A +  +
Sbjct:   11 VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 179          
BLAST of CN184582 vs. ExPASy Swiss-Prot
Match: RHOB_MOUSE (Rho-related GTP-binding protein RhoB OS=Mus musculus GN=Rhob PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.180e-42
Identity = 80/169 (47.34%), Postives = 116/169 (68.64%), Query Frame = 1
Query:    4 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 504
            VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE++H+ P VP++LV  K DLR D+H   +   +   PV T  G  +  +I A  Y+ECS+KT++ V+ VF+ A +  +
Sbjct:   11 VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 179          
The following BLAST results are available for this feature:
BLAST of CN184582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOC_MOUSE2.377e-4348.19Rho-related GTP-binding protein RhoC OS=Mus muscul... [more]
RHOC_HUMAN2.377e-4348.19Rho-related GTP-binding protein RhoC OS=Homo sapie... [more]
RHOC_BOVIN2.377e-4348.19Rho-related GTP-binding protein RhoC OS=Bos taurus... [more]
RHOA_EMENI2.377e-4349.70GTP-binding protein rhoA OS=Emericella nidulans GN... [more]
RHO1_ASHGO2.377e-4351.81GTP-binding protein RHO1 OS=Ashbya gossypii GN=RHO... [more]
RHO1_CAEEL3.105e-4347.93Ras-like GTP-binding protein rhoA OS=Caenorhabditi... [more]
RHOC_CHICK6.917e-4348.19Rho-related GTP-binding protein RhoC OS=Gallus gal... [more]
RHOU_HUMAN1.180e-4252.12Rho-related GTP-binding protein RhoU OS=Homo sapie... [more]
RHOB_RAT1.180e-4247.34Rho-related GTP-binding protein RhoB OS=Rattus nor... [more]
RHOB_MOUSE1.180e-4247.34Rho-related GTP-binding protein RhoB OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184582 ID=CN184582; Name=CN184582; organism=Citrus sinensis; type=EST; length=555bp
ACAGTTGGTGATGGGGCTGTTGGCAAAACTTGCATGCTTATTTGCTACAC
AAGTAACAAGTTTCCTACTGATTATATACCAACGGTGTTCGACAACTTCA
GTGCAAATGTGGTAGCTGAAGGCACTACTGTCAACTTAGGCCTCTGGGAC
ACAGCTGGGCAAGAGGATTACAATAGATTAAGGCCTTTGAGCTACAGAGG
GGCAGACGTTTTTGTCTTAGCTTTCTCATTAGTCAGTCGAGCCAGCTATG
AAAACGTTCTAAAAAAGTGGATCCCTGAACTTCAGCATTACTCTCCCGGA
GTACCAGTTGTATTGGTTGGCACCAAATTGGATCTTCGAGAGGATAAGCA
TTATTTGGCTGATCATCCAGGATTGGTGCCTGTGACCACTGCACAAGGAG
AGGAACTCCGTAAACAGATTGGTGCTGCATATTACATTGAATGCAGCTCG
AAAACTCAGCAGAATGTAAAAGCAGTTTTTGATGCTGCAATCAAGGTAGT
TATCAAACCCCCGCAGAAGCAAAAGGAGAAGAAGAAAAAACAACCGAGGA
TGCCT
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