CN184581

Overview
NameCN184581
Unique NameCN184581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length452
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:588..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.233e-43
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  197 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269

HSP 2 Score: 50.447 bits (119), Expect = 2.233e-43
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            +LMGAVEGYRIAGGPLGEV DPLY
Sbjct:  170 ILMGAVEGYRIAGGPLGEVVDPLY 193
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.233e-43
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  194 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 50.0618 bits (118), Expect = 2.233e-43
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGAVEGYR+AGGPLGEV DPLY
Sbjct:  167 VLMGAVEGYRVAGGPLGEVIDPLY 190
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.233e-43
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 50.0618 bits (118), Expect = 2.233e-43
Identity = 21/24 (87.50%), Postives = 23/24 (95.83%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            +LMGAVEGYR+AGGPLGEV DPLY
Sbjct:  166 ILMGAVEGYRVAGGPLGEVVDPLY 189
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.910e-43
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  191 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263

HSP 2 Score: 51.6026 bits (122), Expect = 2.910e-43
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            +LMGAVEGYRIAGGPLGEVTDP+Y
Sbjct:  164 ILMGAVEGYRIAGGPLGEVTDPIY 187
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.980e-43
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   44 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116

HSP 2 Score: 50.8322 bits (120), Expect = 2.980e-43
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGAVEGYRIAGGPLGEV DPLY
Sbjct:   17 VLMGAVEGYRIAGGPLGEVVDPLY 40
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.792e-43
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  194 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

HSP 2 Score: 50.447 bits (119), Expect = 3.792e-43
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGAVEGYR+AGGPLGEV DPLY
Sbjct:  167 VLMGAVEGYRVAGGPLGEVVDPLY 190
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.792e-43
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 50.8322 bits (120), Expect = 3.792e-43
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGAVEGYRIAGGPLGEV DPLY
Sbjct:  166 VLMGAVEGYRIAGGPLGEVVDPLY 189
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.792e-43
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 50.8322 bits (120), Expect = 3.792e-43
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGAVEGYRIAGGPLGEV DPLY
Sbjct:  166 VLMGAVEGYRIAGGPLGEVVDPLY 189
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.792e-43
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 50.8322 bits (120), Expect = 3.792e-43
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGAVEGYRIAGGPLGEV DPLY
Sbjct:  166 VLMGAVEGYRIAGGPLGEVVDPLY 189
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.797e-43
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  173 SFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245

HSP 2 Score: 51.6026 bits (122), Expect = 3.797e-43
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            +LMGAVEGYRIAGGPLGEVTDP+Y
Sbjct:  146 ILMGAVEGYRIAGGPLGEVTDPIY 169
The following BLAST results are available for this feature:
BLAST of CN184581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB22_PEA2.233e-4393.15Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB24_PETSP2.233e-4394.52Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_TOBAC2.233e-4394.52Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB23_SOYBN2.910e-4393.15Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB2D_SOLLC2.980e-4393.15Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB21_TOBAC3.792e-4393.15Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2C_SOLLC3.792e-4393.15Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC3.792e-4393.15Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC3.792e-4393.15Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_SOYBN3.797e-4393.15Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005L20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184581 ID=CN184581; Name=CN184581; organism=Citrus sinensis; type=EST; length=452bp
TTTTTTTTTTTTGAGAAAAGCAGAACAAGATCAAATTGAAGCATTTTATA
AATAATCACAACTCAAATTAAAGCTTCCATGAGCTCACAACAGATTTACA
TGATATCCAAGAAACCGAAAAGAGAAAAACTCTTATCAACCGAAGCTCAC
TTTCCGGGGACAAAGTTGGTGGCGTAGGCCCAGGCATTGTTATTGACAGG
GTCAGCCAAGTGGTCGGCCAAGTTCTCTAACGGTCCCTTGCCGGTGACAA
TGGCCTGAACGAAGAAACCAAACATGGAGAACATAGCCAACCTTCCATTC
TTGATTTCCTTAACCTTGAGCTCAGCAAAAGCCTCCGGGTCATCAGCCAA
ACCCAATGGATTCAAAGCTGCCACCTGGGTACAATGGGTCAGTCACTTCA
CCGAGCGGCCCTCCAGCAATTCTGTAACCCTCAACGGCTCCCATCAAGAC
CA
back to top