CN184581 | Citrus Genome Database

Overview


Name	CN184581
Unique Name	CN184581
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	452

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9540	contig	Csv1_Contig9540:588..1038.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.955e-38
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = -1

Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            A +PLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265

HSP 2 Score: 39.6614 bits (91), Expect = 1.955e-38
Identity = 17/24 (70.83%), Postives = 19/24 (79.17%), Query Frame = -3

Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMG VEGYR+ GGPLGE  D +Y
Sbjct:  166 VLMGFVEGYRVGGGPLGEGLDKIY 189

[Close]

BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.546e-38
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = -1

Query:  153 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 368
            + +PLGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  196 SFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267

HSP 2 Score: 51.6026 bits (122), Expect = 2.546e-38
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = -3

Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGAVEGYR+AGGPLGEVTDP+Y
Sbjct:  169 VLMGAVEGYRVAGGPLGEVTDPIY 192

[Close]

BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.337e-38
Identity = 61/73 (83.56%), Postives = 70/73 (95.89%), Query Frame = -1

Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            A +PLGLADDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  193 AFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265

HSP 2 Score: 43.5134 bits (101), Expect = 7.337e-38
Identity = 19/24 (79.17%), Postives = 20/24 (83.33%), Query Frame = -3

Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMG VEGYR+ GGPLGE  DPLY
Sbjct:  166 VLMGFVEGYRVGGGPLGEGLDPLY 189

[Close]

BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 9.558e-38
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = -1

Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            A +PLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  194 AFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266

HSP 2 Score: 37.7354 bits (86), Expect = 9.558e-38
Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = -3

Query:  382 VLMGAVEGYRIAGGPLGEVTDPL 450
            VLMG +EGYR+ GG LGE  DPL
Sbjct:  167 VLMGLIEGYRVGGGTLGEGLDPL 189

[Close]

BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.560e-38
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = -1

Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            A +PLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  191 AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

HSP 2 Score: 39.2762 bits (90), Expect = 9.560e-38
Identity = 17/24 (70.83%), Postives = 19/24 (79.17%), Query Frame = -3

Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMG VEGYR+ GGPLGE  D +Y
Sbjct:  164 VLMGFVEGYRVGGGPLGEGLDKVY 187

[Close]

BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.560e-38
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = -1

Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            A +PLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  191 AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

HSP 2 Score: 39.2762 bits (90), Expect = 9.560e-38
Identity = 17/24 (70.83%), Postives = 19/24 (79.17%), Query Frame = -3

Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMG VEGYR+ GGPLGE  D +Y
Sbjct:  164 VLMGFVEGYRVGGGPLGEGLDKVY 187

[Close]

BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.656e-37
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = -1

Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   52 SFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124

HSP 2 Score: 39.6614 bits (91), Expect = 1.656e-37
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = -3

Query:  379 VLMGAVEGYRIAG-GPLGEVTDPLY 450
            +LMGAVEGYR+AG GPLGE  D LY
Sbjct:   24 ILMGAVEGYRVAGDGPLGEAEDLLY 48

[Close]

BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.867e-33
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = -1

Query:  156 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 368
            A +PLGLADDP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  202 AFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272

HSP 2 Score: 41.2022 bits (95), Expect = 4.867e-33
Identity = 18/24 (75.00%), Postives = 19/24 (79.17%), Query Frame = -3

Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMG VEGYR+ GGP GE  DPLY
Sbjct:  175 VLMGLVEGYRVNGGPAGEGLDPLY 198

[Close]

BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.345e-33
Identity = 57/71 (80.28%), Postives = 63/71 (88.73%), Query Frame = -1

Query:  156 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 368
            + +PLGLADDP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  184 SFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254

HSP 2 Score: 40.817 bits (94), Expect = 6.345e-33
Identity = 17/24 (70.83%), Postives = 19/24 (79.17%), Query Frame = -3

Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMG +EGYR+ GGP GE  DPLY
Sbjct:  157 VLMGLIEGYRVNGGPAGEGLDPLY 180

[Close]

BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.252e-32
Identity = 55/71 (77.46%), Postives = 63/71 (88.73%), Query Frame = -1

Query:  156 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 368
            + +PLGLADDP+ FAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  181 SFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251

HSP 2 Score: 40.4318 bits (93), Expect = 5.252e-32
Identity = 16/24 (66.67%), Postives = 19/24 (79.17%), Query Frame = -3

Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            +LMG +EGYR+ GGP GE  DPLY
Sbjct:  154 ILMGLIEGYRVNGGPAGEGLDPLY 177

The following BLAST results are available for this feature:

BLAST of CN184581 vs. ExPASy Swiss-Prot

BLAST of CN184581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72


Match Name	E-value	Identity	Description
CB26_PETSP	1.955e-38	90.41	Chlorophyll a-b binding protein 37, chloroplastic ...	[more]
CB2_PHYPA	2.546e-38	84.72	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB215_PEA	7.337e-38	83.56	Chlorophyll a-b binding protein 215, chloroplastic...	[more]
CB21_PINTH	9.558e-38	91.78	Chlorophyll a-b binding protein type I, chloroplas...	[more]
CB23_ORYSJ	9.560e-38	87.67	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_ORYSI	9.560e-38	87.67	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_RAPSA	1.656e-37	89.04	Chlorophyll a-b binding of LHCII type 1 protein (F...	[more]
CB2_DUNSA	4.867e-33	78.87	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB2_CHLMO	6.345e-33	80.28	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB2_CHLRE	5.252e-32	77.46	Chlorophyll a-b binding protein of LHCII type I, c...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS04_0005L20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L20, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN184581 ID=CN184581; Name=CN184581; organism=Citrus sinensis; type=EST; length=452bp
TTTTTTTTTTTTGAGAAAAGCAGAACAAGATCAAATTGAAGCATTTTATA
AATAATCACAACTCAAATTAAAGCTTCCATGAGCTCACAACAGATTTACA
TGATATCCAAGAAACCGAAAAGAGAAAAACTCTTATCAACCGAAGCTCAC
TTTCCGGGGACAAAGTTGGTGGCGTAGGCCCAGGCATTGTTATTGACAGG
GTCAGCCAAGTGGTCGGCCAAGTTCTCTAACGGTCCCTTGCCGGTGACAA
TGGCCTGAACGAAGAAACCAAACATGGAGAACATAGCCAACCTTCCATTC
TTGATTTCCTTAACCTTGAGCTCAGCAAAAGCCTCCGGGTCATCAGCCAA
ACCCAATGGATTCAAAGCTGCCACCTGGGTACAATGGGTCAGTCACTTCA
CCGAGCGGCCCTCCAGCAATTCTGTAACCCTCAACGGCTCCCATCAAGAC
CA