CN184581

Overview
NameCN184581
Unique NameCN184581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length452
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:588..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.965e-31
Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = -1
Query:  153 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 368
            + + LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  196 SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          

HSP 2 Score: 49.2914 bits (116), Expect = 1.965e-31
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = -3
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            +LMGAVEGYRIA GPLGEVTDPLY
Sbjct:  170 ILMGAVEGYRIARGPLGEVTDPLY 193          
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.359e-31
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = -1
Query:  153 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 362
            +PLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  195 DPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          

HSP 2 Score: 25.7942 bits (55), Expect = 7.359e-31
Identity = 14/22 (63.64%), Postives = 16/22 (72.73%), Query Frame = -3
Query:  388 VLMGAVEGYRIAGGP-LGEVTD 450
            VLMG VEG+RI G P +GE  D
Sbjct:  165 VLMGLVEGFRINGLPGVGEGND 186          
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.276e-29
Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = -1
Query:  153 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 362
            +PLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  198 DPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          

HSP 2 Score: 22.7126 bits (47), Expect = 2.276e-29
Identity = 14/33 (42.42%), Postives = 17/33 (51.52%), Query Frame = -3
Query:  382 VLMGAVEGYRIAG----------GPLGEVTDPL 450
            +LMG VEG+RI G           P G+  DPL
Sbjct:  168 LLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPL 200          
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.169e-26
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = -1
Query:  153 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 362
            +PLGLADDP+ FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  183 DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          

HSP 2 Score: 23.483 bits (49), Expect = 2.169e-26
Identity = 11/21 (52.38%), Postives = 12/21 (57.14%), Query Frame = -3
Query:  388 VLMGAVEGYRIAGGPLGEVTD 450
            VLMG  E YR  GG  G + D
Sbjct:  152 VLMGLAEAYRANGGSEGFLDD 172          
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.571e-20
Identity = 45/70 (64.29%), Postives = 51/70 (72.86%), Query Frame = -1
Query:  156 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 362
            +PLGLADDP+ F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   52 DPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          

HSP 2 Score: 28.1054 bits (61), Expect = 2.571e-20
Identity = 16/27 (59.26%), Postives = 17/27 (62.96%), Query Frame = -3
Query:  379 VLMGAVEGYR---IAGGPLGEVTDPLY 450
            +LMGAVEGYR    A G  GE  D LY
Sbjct:   20 LLMGAVEGYRAGNTAPGQFGEDLDRLY 46          
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.253e-19
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = -1
Query:  186 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 362
            +PLGLA DPE  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  207 DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.279e-17
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = -1
Query:  186 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 362
            NPLG   D ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  207 NPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.929e-16
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -1
Query:  186 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 362
            NPLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  209 NPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.862e-14
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = -1
Query:  186 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 368
            A +PLG + DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  171 AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.862e-14
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  186 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 368
            A +PLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  172 AFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of CN184581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2_MALDO1.965e-3175.00Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB23_SOLLC7.359e-3187.14Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU2.276e-2985.71Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE2.169e-2678.57Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_EUGGR2.571e-2064.29Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB26_ARATH9.253e-1974.58Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB13_SOLLC2.279e-1766.10Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.929e-1661.02Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU6.862e-1462.90Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC6.862e-1462.90Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184581 ID=CN184581; Name=CN184581; organism=Citrus sinensis; type=EST; length=452bp
TTTTTTTTTTTTGAGAAAAGCAGAACAAGATCAAATTGAAGCATTTTATA
AATAATCACAACTCAAATTAAAGCTTCCATGAGCTCACAACAGATTTACA
TGATATCCAAGAAACCGAAAAGAGAAAAACTCTTATCAACCGAAGCTCAC
TTTCCGGGGACAAAGTTGGTGGCGTAGGCCCAGGCATTGTTATTGACAGG
GTCAGCCAAGTGGTCGGCCAAGTTCTCTAACGGTCCCTTGCCGGTGACAA
TGGCCTGAACGAAGAAACCAAACATGGAGAACATAGCCAACCTTCCATTC
TTGATTTCCTTAACCTTGAGCTCAGCAAAAGCCTCCGGGTCATCAGCCAA
ACCCAATGGATTCAAAGCTGCCACCTGGGTACAATGGGTCAGTCACTTCA
CCGAGCGGCCCTCCAGCAATTCTGTAACCCTCAACGGCTCCCATCAAGAC
CA
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