CN184581
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.965e-31 Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = -1 Query: 153 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 368 + + LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K LENLADHL VNNNA + TNFVPG Sbjct: 196 SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267 HSP 2 Score: 49.2914 bits (116), Expect = 1.965e-31 Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = -3 Query: 379 VLMGAVEGYRIAGGPLGEVTDPLY 450 +LMGAVEGYRIA GPLGEVTDPLY Sbjct: 170 ILMGAVEGYRIARGPLGEVTDPLY 193
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 7.359e-31 Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = -1 Query: 153 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 362 +PLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG Sbjct: 195 DPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264 HSP 2 Score: 25.7942 bits (55), Expect = 7.359e-31 Identity = 14/22 (63.64%), Postives = 16/22 (72.73%), Query Frame = -3 Query: 388 VLMGAVEGYRIAGGP-LGEVTD 450 VLMG VEG+RI G P +GE D Sbjct: 165 VLMGLVEGFRINGLPGVGEGND 186
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.276e-29 Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = -1 Query: 153 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 362 +PLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG Sbjct: 198 DPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267 HSP 2 Score: 22.7126 bits (47), Expect = 2.276e-29 Identity = 14/33 (42.42%), Postives = 17/33 (51.52%), Query Frame = -3 Query: 382 VLMGAVEGYRIAG----------GPLGEVTDPL 450 +LMG VEG+RI G P G+ DPL Sbjct: 168 LLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPL 200
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.169e-26 Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = -1 Query: 153 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 362 +PLGLADDP+ FAELKVKEIKNGRLAMFS GFFVQAIVTGKGP++NL DHLADP N A+A AT F PG Sbjct: 183 DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252 HSP 2 Score: 23.483 bits (49), Expect = 2.169e-26 Identity = 11/21 (52.38%), Postives = 12/21 (57.14%), Query Frame = -3 Query: 388 VLMGAVEGYRIAGGPLGEVTD 450 VLMG E YR GG G + D Sbjct: 152 VLMGLAEAYRANGGSEGFLDD 172
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 2.571e-20 Identity = 45/70 (64.29%), Postives = 51/70 (72.86%), Query Frame = -1 Query: 156 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 362 +PLGLADDP+ F ELKVKEIKNGRLAM M GF+ QAIVTG+GP+EN HL DP +N A T F P Sbjct: 52 DPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121 HSP 2 Score: 28.1054 bits (61), Expect = 2.571e-20 Identity = 16/27 (59.26%), Postives = 17/27 (62.96%), Query Frame = -3 Query: 379 VLMGAVEGYR---IAGGPLGEVTDPLY 450 +LMGAVEGYR A G GE D LY Sbjct: 20 LLMGAVEGYRAGNTAPGQFGEDLDRLY 46
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 9.253e-19 Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = -1 Query: 186 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 362 +PLGLA DPE A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN Sbjct: 207 DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.279e-17 Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = -1 Query: 186 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 362 NPLG D ++ ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN Sbjct: 207 NPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.929e-16 Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = -1 Query: 186 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 362 NPLG D ++ ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN Sbjct: 209 NPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 6.862e-14 Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = -1 Query: 186 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 368 A +PLG + DP F ELK+KEIKNGRLAM + GF V Q+ G GPLENLA HLADP +NN Sbjct: 171 AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 6.862e-14 Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 186 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 368 A +PLG + DP F ELKVKEIKNGRLA+ ++ GF V Q+ G GPLENLA HLADP +NN Sbjct: 172 AFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233 The following BLAST results are available for this feature:
BLAST of CN184581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184581 ID=CN184581; Name=CN184581; organism=Citrus sinensis; type=EST; length=452bpback to top |