CN184579

Overview
NameCN184579
Unique NameCN184579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3990 contig Csv1_Contig3990:181..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184579 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLPM (Chaperone protein dnaJ OS=Wolbachia pipientis wMel GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 61/151 (40.40%), Postives = 74/151 (49.01%), Query Frame = 3
Query:  222 DYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNK-EPNAEQHLKEISNAYEVLSDDEKRSLNDKFGEAGLKGAGMGM---GDFSNPFDLFESLFEGTXXXXXXXXXXXXXXXXXXVDGQDEYYSLVINFKEAVFGVEKEIEITRLETCGTC 662
            DYY +L V RNAS  EIK AY+KLA  YHPD N     AE+  KE++ AYEVLSD EKR+  D++G  G  G   G    GDFS   D+F   F G                   V G D  Y L I  ++A  G++  I       C TC
Sbjct:    5 DYYDLLEVGRNASIDEIKKAYKKLALRYHPDRNPGNQEAEEKFKEVTAAYEVLSDSEKRAGYDRYGHEGASGGFQGFSSAGDFS---DIFNDFFGG--GFGGGASRSRAKRSTTGVSGADLRYDLEITLEDAFKGIQAPIHYVTNVKCDTC 150          
BLAST of CN184579 vs. ExPASy Swiss-Prot
Match: DNAJ_RHIE6 (Chaperone protein dnaJ OS=Rhizobium etli (strain CIAT 652) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  213 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVN-KEPNAEQHLKEISNAYEVLSDDEKRSLNDKFGEAGLKGAGMGMGDFSNPFDLFESLFEGTXXXXXXXXXXXXXXXXXXVDGQDEYYSLVINFKEAVFGVEKEIEITRLETCGTC 662
            A +D+Y  LGV+++A + E+KSA+RKLA  YHPD N  + +AE+  KEI+ AYE+L D +KR+  D++G A  +  GMG G        F  +FE                      G D  Y++ I  +EA  G   +I +    TC  C
Sbjct:    2 AKADFYETLGVAKSADEKELKSAFRKLAMKYHPDKNPDDKDAERKFKEINEAYEMLKDPQKRAAYDRYGHAAFEHGGMGGGGGGFAGGGFSDIFEDIFGEMMGGGRARQRSSGGRERGADLRYNMEITLEEAFSGKTAQIRVPTSITCDVC 152          
BLAST of CN184579 vs. ExPASy Swiss-Prot
Match: DNAJ_RALSO (Chaperone protein dnaJ OS=Ralstonia solanacearum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 60/160 (37.50%), Postives = 80/160 (50.00%), Query Frame = 3
Query:  213 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKE-PNAEQHLKEISNAYEVLSDDEKRSLNDKFGEAGLK-------GAG-MGMGDFSNPF-DLFESLFEGTXXXXXXXXXXXXXXXXXXVDGQDEYYSLVINFKEAVFGVEKEIEITRLETCGTC 662
            A  DYY VLGV +NAS  EIK AYRKLA  YHPD N +   AE+  KE   AYE+LSD +K++  D++G AG+        GAG  G G F+  F D+F  +F                       G D  YS+ I  ++A  G + +I +   + C  C
Sbjct:    2 AKRDYYEVLGVGKNASDDEIKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEMLSDADKKAAYDQYGHAGVDPNMAGGFGAGAQGFGGFAEAFGDIFGDIF------GQAQQGGRRGAGPQMYRGADLRYSMEITLEQAAHGYDTQIRVPHWDECDHC 155          
BLAST of CN184579 vs. ExPASy Swiss-Prot
Match: DNAJ_PELUB (Chaperone protein dnaJ OS=Pelagibacter ubique GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 63/161 (39.13%), Postives = 77/161 (47.83%), Query Frame = 3
Query:  213 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNA-EQHLKEISNAYEVLSDDEKRSLNDKFGEAGLK----------GAGMGMGDFSNPFDLFESLFEGTXXXXXXXXXXXXXXXXXXVDGQDEYYSLVINFKEAVFGVEKEIEITRLETCGTC 662
            A  D+Y VLGVS++AS  E+KSAYRKLA  YHPD N    A E   KE   AY VLSD EK+   D FG A  +          G G G  DFS+ F+ F   F G                     G D  Y L I  +EA  G +++I+ +  E C TC
Sbjct:    2 AKRDFYDVLGVSKSASPEELKSAYRKLAVKYHPDKNPGDKASEDKFKEAGEAYGVLSDKEKKQNYDNFGHAAFEGGGGRQGGGFGGGFGGADFSDIFEDFFGDFGGGQSRGRRKTNNR---------GSDLRYDLSITLEEAYEGKKQDIKFSTTEKCNTC 153          
BLAST of CN184579 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPCP (Chaperone protein dnaJ OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 63/162 (38.89%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  222 DYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNA---EQHLKEISNAYEVLSDDEKRSLNDKFGEAGLK----GAGM-------GMGDFSNPF-DLFESLFEGTXXXXXXXXXXXXXXXXXXVDGQDEYYSLVINFKEAVFGVEKEIEITRLETCGTC 662
            DYY VLGV + AS+ EIK AYRKLA  +HPD N+   A   E+  KE   AYE+LSD +KR+  D+FG AG+     GAG        G G F+  F D+F  +F                       G D  Y++ I  +EA  G E +I I   E C TC
Sbjct:    5 DYYEVLGVGKTASEDEIKKAYRKLAMKHHPDRNQGDGAKASEEKFKEAKEAYEMLSDAQKRAAYDQFGHAGVDPNAGGAGFRPGAGGEGYGGFAEAFGDIFGDIF-----GQQGGGGRRGAGGQQVYRGADLSYAMEITLEEAAHGKESQIRIPTWEECDTC 161          
BLAST of CN184579 vs. ExPASy Swiss-Prot
Match: DNAJ_FUSNP (Chaperone protein dnaJ OS=Fusobacterium nucleatum subsp. polymorphum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 64/166 (38.55%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  213 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDV------NKEPNAEQHLKEISNAYEVLSDDEKRSLNDKFGEAGLK--GAGMGMGDFSNPFDLFESLF--------EGTXXXXXXXXXXXXXXXXXXVDGQDEYYSLVINFKEAVFGVEKEIEITRLETCGTC 662
            A  DYY VLGV +NAS+++IK AYRK A  YHPD        ++ +AE+  KEI+ AY+VLSD+EK+   D+FG A  +  GAG G G  +  FD F  +F         G                     G D  Y+L I  +EA  GVEK I+  R   C  C
Sbjct:    2 AKRDYYEVLGVDKNASENDIKKAYRKAAMKYHPDKFANATDAEKKDAEEKFKEINEAYQVLSDNEKKQQYDQFGHAAFEQGGAGFGGGFNAGGFD-FGDIFGDNIFGGGGGFGGFEGFSGFGGSSRRSYVEPGNDLRYNLEITLEEAAKGVEKTIKYKRTGKCEHC 166          
BLAST of CN184579 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLTR (Chaperone protein dnaJ OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.753e-19
Identity = 59/151 (39.07%), Postives = 72/151 (47.68%), Query Frame = 3
Query:  222 DYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNK-EPNAEQHLKEISNAYEVLSDDEKRSLNDKFGEAGLKGA---GMGMGDFSNPFDLFESLFEGTXXXXXXXXXXXXXXXXXXVDGQDEYYSLVINFKEAVFGVEKEIEITRLETCGTC 662
            DYY +LGV RNAS  EIK AY+KLA  YHPD N     AE+  KEI+ AYEVLSD EKR+  D++G  G  G      G G   +  D+F   F G                   V G D  Y L I  ++A  G++  I       C  C
Sbjct:    5 DYYKLLGVDRNASTDEIKKAYKKLALKYHPDRNPGNKEAEEKFKEITAAYEVLSDSEKRAGYDRYGHEGASGGFDFSQGFGSAGDFSDIFNDFFGG---EFGSSSRSKAKRSTTGVPGADLRYDLEITLEDAFKGIQAPIHYVTNVKCDMC 152          
BLAST of CN184579 vs. ExPASy Swiss-Prot
Match: DNAJ_RHOSK (Chaperone protein dnaJ OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.753e-19
Identity = 61/162 (37.65%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  213 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKE-PNAEQHLKEISNAYEVLSDDEKRSLNDKFGEAGLKGAGMG----------MGDFSNPF-DLFESLFEGTXXXXXXXXXXXXXXXXXXVDGQDEYYSLVINFKEAVFGVEKEIEITRLETCGTC 662
            A  DYY VLGVSR AS  E+K AYR  A+  HPD N + P AE   KE++ AY+VL D +K++  D++G A  +G GMG           GDF++ F D+FE LF                       G D  Y+L +   EA  GV+K I +     C  C
Sbjct:    2 AKRDYYEVLGVSRTASADELKKAYRTKAKELHPDRNADNPQAEAQFKEVNEAYDVLRDADKKAAYDRYGHAAFEG-GMGGGARAGGYGQQGDFASAFSDVFEDLF------GDFMGGRGGAPRSRAQRGSDLRYNLRVTLDEAYRGVQKTINVPASVACDAC 156          
BLAST of CN184579 vs. ExPASy Swiss-Prot
Match: DNAJ_RHIEC (Chaperone protein dnaJ OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.753e-19
Identity = 53/151 (35.10%), Postives = 76/151 (50.33%), Query Frame = 3
Query:  213 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVN-KEPNAEQHLKEISNAYEVLSDDEKRSLNDKFGEAGLKGAGMGMGDFSNPFDLFESLFEGTXXXXXXXXXXXXXXXXXXVDGQDEYYSLVINFKEAVFGVEKEIEITRLETCGTC 662
            A +D+Y  LGV+++A + E+KSA+RKLA  YHPD N  +  AE+  KEI+ AYE+L D +KR+  D++G A  +  GMG G        F  +FE                      G D  Y++ I  +EA  G   +I +    TC  C
Sbjct:    2 AKADFYETLGVAKSADEKELKSAFRKLAMKYHPDKNPDDKEAERKFKEINEAYEMLKDPQKRAAYDRYGHAAFEHGGMGGGGGGFAGGGFSDIFEDIFGEMMGGGRGRQRSAGGRERGADLRYNMEITLEEAFSGKTAQIRVPTSITCDVC 152          
BLAST of CN184579 vs. ExPASy Swiss-Prot
Match: DNAJ_PSESM (Chaperone protein dnaJ OS=Pseudomonas syringae pv. tomato GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.753e-19
Identity = 60/161 (37.27%), Postives = 81/161 (50.31%), Query Frame = 3
Query:  213 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNA-EQHLKEISNAYEVLSDDEKRSLNDKFGEAGLK---------GAGMGMGDFSNPF-DLFESLFEGTXXXXXXXXXXXXXXXXXXVDGQDEYYSLVINFKEAVFGVEKEIEITRLETCGTC 662
            A  DYY VLGV R +S++++K AYR+LA  +HPD N +  A E+  KE + AYEVLSD  KR+  D++G AG+          G G G  +FS+ F D+F   F G                     G D  Y+L +N +EAV G    I +  L  C  C
Sbjct:    2 AKRDYYEVLGVERGSSEADLKKAYRRLAMKHHPDRNPDDKASEEMFKEANEAYEVLSDASKRAAYDQYGHAGVDPSMGGGGGFGGGAGGANFSDIFGDVFSDFFGGGRGGGGGGRGGAQR-------GSDLRYTLELNLEEAVRGTTVNIRVPTLVNCKPC 155          
The following BLAST results are available for this feature:
BLAST of CN184579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_WOLPM4.405e-1940.40Chaperone protein dnaJ OS=Wolbachia pipientis wMel... [more]
DNAJ_RHIE64.405e-1935.10Chaperone protein dnaJ OS=Rhizobium etli (strain C... [more]
DNAJ_RALSO4.405e-1937.50Chaperone protein dnaJ OS=Ralstonia solanacearum G... [more]
DNAJ_PELUB4.405e-1939.13Chaperone protein dnaJ OS=Pelagibacter ubique GN=d... [more]
DNAJ_LEPCP4.405e-1938.89Chaperone protein dnaJ OS=Leptothrix cholodnii (st... [more]
DNAJ_FUSNP4.405e-1938.55Chaperone protein dnaJ OS=Fusobacterium nucleatum ... [more]
DNAJ_WOLTR5.753e-1939.07Chaperone protein dnaJ OS=Wolbachia sp. subsp. Bru... [more]
DNAJ_RHOSK5.753e-1937.65Chaperone protein dnaJ OS=Rhodobacter sphaeroides ... [more]
DNAJ_RHIEC5.753e-1935.10Chaperone protein dnaJ OS=Rhizobium etli (strain C... [more]
DNAJ_PSESM5.753e-1937.27Chaperone protein dnaJ OS=Pseudomonas syringae pv.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005L18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184579 ID=CN184579; Name=CN184579; organism=Citrus sinensis; type=EST; length=664bp
GAGGGTCCACTTTTCACTTCTTTGACCACAATTGCCCTTATGCCAGTTGG
GGAGGGAAAAGAGGCCTGCTGCAAGAAGACATCGCAAGCAGGTTAAGCTG
TCTGGCTGCTCCAAGTTCAAGCTTTTTTTCACGCGATTCCTTCTCTTTGT
TTTCTTATGCTAGTCCATCTCAGACTTCATACCGTCGTAGGGGAGCACGA
TTGATCGTTAGAGCTGATAGTGACTACTATTCAGTTCTAGGGGTGTCAAG
AAATGCAAGTAAATCTGAAATTAAAAGCGCTTATCGGAAGCTTGCAAGGA
GTTATCACCCGGATGTAAACAAAGAACCTAATGCAGAACAGCATCTCAAG
GAAATTAGCAATGCATATGAGGTTCTGTCAGATGATGAGAAACGTTCTTT
AAATGACAAATTTGGGGAGGCTGGACTTAAAGGTGCTGGTATGGGCATGG
GGGATTTCAGCAATCCTTTCGATTTGTTTGAATCACTATTTGAGGGCACG
GGTGGTATGGGCGGAATGGGGAGCATGGGGAGCAGAGCTTCCAGGAGCAG
AGCAGTTGATGGACAAGATGAATATTACAGCCTTGTCATAAATTTCAAAG
AAGCTGTTTTTGGCGTTGAAAAGGAGATTGAGATAACACGTCTTGAGACC
TGTGGCACTTGCCA
back to top