DC887399 | Citrus Genome Database

Overview


Name	DC887399
Unique Name	DC887399
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	502

Libraries


Library Name	Type
EIC	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.713e-28
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -1

Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+
Sbjct:   77 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 183

[Close]

BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.713e-28
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -1

Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+
Sbjct:   77 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 183

[Close]

BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.713e-28
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -1

Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+
Sbjct:   77 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 183

[Close]

BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.713e-28
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -1

Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+
Sbjct:   77 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 183

[Close]

BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.713e-28
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -1

Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+
Sbjct:   77 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 183

[Close]

BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.713e-28
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -1

Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+
Sbjct:   77 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 183

[Close]

BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.511e-28
Identity = 61/107 (57.01%), Postives = 78/107 (72.90%), Query Frame = -1

Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF  IAK+LP+
Sbjct:   77 AGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 183

[Close]

BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.511e-28
Identity = 61/107 (57.01%), Postives = 78/107 (72.90%), Query Frame = -1

Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF  IAK+LP+
Sbjct:   77 AGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 183

[Close]

BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.511e-28
Identity = 61/107 (57.01%), Postives = 78/107 (72.90%), Query Frame = -1

Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF  IAK+LP+
Sbjct:   77 AGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 183

[Close]

BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.511e-28
Identity = 61/107 (57.01%), Postives = 78/107 (72.90%), Query Frame = -1

Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF  IAK+LP+
Sbjct:   77 AGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 183

The following BLAST results are available for this feature:

BLAST of DC887399 vs. ExPASy Swiss-Prot

BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318


Match Name	E-value	Identity	Description
RAB5A_PIG	1.713e-28	57.01	Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ...	[more]
RAB5A_MOUSE	1.713e-28	57.01	Ras-related protein Rab-5A OS=Mus musculus GN=Rab5...	[more]
RAB5A_MACFA	1.713e-28	57.01	Ras-related protein Rab-5A OS=Macaca fascicularis ...	[more]
RAB5A_HUMAN	1.713e-28	57.01	Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5...	[more]
RAB5A_CANFA	1.713e-28	57.01	Ras-related protein Rab-5A OS=Canis familiaris GN=...	[more]
RAB5A_BOVIN	1.713e-28	57.01	Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ...	[more]
RAB5B_PONAB	6.511e-28	57.01	Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5...	[more]
RAB5B_MOUSE	6.511e-28	57.01	Ras-related protein Rab-5B OS=Mus musculus GN=Rab5...	[more]
RAB5B_HUMAN	6.511e-28	57.01	Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5...	[more]
RAB5B_CHICK	6.511e-28	57.01	Ras-related protein Rab-5B OS=Gallus gallus GN=RAB...	[more]

Pages

Properties


Property Name	Value
Genbank description	DC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC