DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 42/107 (39.25%), Postives = 70/107 (65.42%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQE + ++   YYRG      VYDIT  ++FN    W+++ ++H S ++V+ L+GNK+DL  +R+V  ++G  +A ++G+ F+ETSAKTA N+ + +   AK + R
Sbjct:   63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYR 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AG ERY A+   YYRG      V+D+T   ++   + W+KEL  H    IV+ LVGNK+DL + REVP ++   +AE NG+ F+ETSA  + N+   F+ + K +
Sbjct:   69 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEI 173          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB18_RAT (Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+  L P YYRG      VYD+T  D+F K   W+ EL+ + +  DIV  LVGNK D  E REV   +G+++A K+ M FIE SAKT D +   FEE+ +++
Sbjct:   65 AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB18_PONAB (Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+  L P YYRG      VYD+T  D+F K   W+ EL+ + +  DIV  LVGNK D  E REV   +G+++A K+ M FIE SAKT D +   FEE+ +++
Sbjct:   65 AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB18_MOUSE (Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+  L P YYRG      VYD+T  D+F K   W+ EL+ + +  DIV  LVGNK D  E REV   +G+++A K+ M FIE SAKT D +   FEE+ +++
Sbjct:   65 AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB18_HUMAN (Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+  L P YYRG      VYD+T  D+F K   W+ EL+ + +  DIV  LVGNK D  E REV   +G+++A K+ M FIE SAKT D +   FEE+ +++
Sbjct:   65 AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB18_BOVIN (Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+  L P YYRG      VYD+T  D+F K   W+ EL+ + +  DIV  LVGNK D  E REV   +G+++A K+ M FIE SAKT D +   FEE+ +++
Sbjct:   65 AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.607e-18
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDIT   SF+    W+KEL++H   +IV+ LVGNK DL   R V  ++   +A +N + FIETSA  A N+ + F+ +   + R
Sbjct:   67 AGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFR 173          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB6B_CAEEL (Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.099e-18
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQER+ +L P Y R       VYDIT+ +SF++   W+ +++     D+++ LVGNK DL +KR+V   +G   A++  + FIETSAK   N+ QLF  IA  LP
Sbjct:   67 AGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALP 172          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.581e-18
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = -1
Query:  200 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 502
            AGQERY A+   YYRG      VYDIT   +F   + W+KEL+ H   +IV+ LVGNKADL   R V  +D   +AE+   FF+ETSA  + N+   F E+
Sbjct:   71 AGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEV 171          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RAB2B_MOUSE1.231e-1839.25Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB25_MOUSE1.231e-1840.95Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB18_RAT1.231e-1846.23Ras-related protein Rab-18 OS=Rattus norvegicus GN... [more]
RAB18_PONAB1.231e-1846.23Ras-related protein Rab-18 OS=Pongo abelii GN=RAB1... [more]
RAB18_MOUSE1.231e-1846.23Ras-related protein Rab-18 OS=Mus musculus GN=Rab1... [more]
RAB18_HUMAN1.231e-1846.23Ras-related protein Rab-18 OS=Homo sapiens GN=RAB1... [more]
RAB18_BOVIN1.231e-1846.23Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 ... [more]
YPT3_SCHPO1.607e-1842.99GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAB6B_CAEEL2.099e-1842.45Ras-related protein Rab-6.2 OS=Caenorhabditis eleg... [more]
RB11B_TOBAC3.581e-1845.54Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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