DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 5.171e-17
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AGQER+  +   YYRG      VYDIT+  SF+  + W++ +++H S D+   ++GNK D+++KR+V  + G + A   G+ F+ETSAK++ N+ + F  +A+
Sbjct:   65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLAR 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.171e-17
Identity = 39/102 (38.24%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  197 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 502
            AGQE + ++   YYRG      VYDIT  ++FN    W+++ ++H + ++ + LVGNK DL  +R V  ++G ++A+++G+ F+E SAKTA N+ + F + A
Sbjct:   63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTA 164          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.171e-17
Identity = 39/102 (38.24%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  197 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 502
            AGQE + ++   YYRG      VYDIT  ++FN    W+++ ++H + ++ + LVGNK DL  +R V  ++G ++A+++G+ F+E SAKTA N+ + F + A
Sbjct:   63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTA 164          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.171e-17
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 502
            AGQER+  +   YYR        YDIT   SF     W+ E +K+G+ +++M L+GNK+DL EKR++  ++    AEK+G+   +ETSAK + N++++F  +AK L
Sbjct:   72 AGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKYGAANLMMMLIGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKEL 177          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.753e-17
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYD+T   ++     W+KEL+ H  P+IV+ L+GNK+DL     V   +    AE+ G++F+ETSA  A N+   F E   ++ R
Sbjct:   70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYR 176          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.753e-17
Identity = 41/105 (39.05%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+  +   YYRG      VYD+T  DSFN  + W++E+ ++ +  +   LVGNK+D+ +K+ V      E+A+  G+ F+ETSAK A N+ Q F  +A+++
Sbjct:   65 AGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQI 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.753e-17
Identity = 42/106 (39.62%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQER+ +L P Y R       VYDIT+ +SF   + W+++++     D+++ LVGNK DL +KR+V  ++G + A++  +  +ETSAK   N+  LF +IA+ LP
Sbjct:   68 AGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLP 173          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.753e-17
Identity = 42/106 (39.62%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQER+ ++   YYRG      VYDITS +++N    W+ + +   SP+IV+ L GNK DL   REV   +   +A++N + F+ETSA T +N+ + F + A+ +P
Sbjct:   65 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSIP 170          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 6.753e-17
Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ ++   YYR       +YDIT+  SF+  + W+ E+ ++   D+V+ L+GNKAD+  +R + ++DG   A + G+ F+ETSAKT  N+   F  IAK L
Sbjct:   87 AGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKEL 191          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.753e-17
Identity = 43/106 (40.57%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 502
            AGQER+  +   YYR        YD+T   +F     W+ E++K+G+ ++V+ L+GNK+DL EKR V  +D    AEK G+   +ETSAK + NI+++F  +AK L
Sbjct:   74 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESRNIDEVFVLMAKEL 179          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RAB8B_HUMAN5.171e-1737.86Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB2B_MAIZE5.171e-1738.24Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB2A_MAIZE5.171e-1738.24Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB19_XENTR5.171e-1739.62Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
YPT3_NICPL6.753e-1740.19Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
YPT1_NEUCR6.753e-1739.05GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RYH1_SCHPO6.753e-1739.62GTP-binding protein ryh1 OS=Schizosaccharomyces po... [more]
RAB4B_DANRE6.753e-1739.62Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB37_HUMAN6.753e-1740.00Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RAB19_RAT6.753e-1740.57Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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