DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 9.401e-27
Identity = 58/106 (54.72%), Postives = 76/106 (71.70%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQER+ +LAP+YYRG      VYDIT  DSF+  + WVKEL++HG  +IVMA+ GNK DL + REVP +D  EYAE  G   +ETSAK A NI +LF+ I++++P
Sbjct:   62 AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGALVVETSAKNAINIEELFQGISRQIP 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.401e-27
Identity = 58/106 (54.72%), Postives = 76/106 (71.70%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQER+ +LAP+YYRG      VYDIT  DSF+  + WVKEL++HG  +IVMA+ GNK DL + REVP +D  EYAE  G   +ETSAK A NI +LF+ I++++P
Sbjct:   62 AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.094e-26
Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQER+ +LAP+YYRG      VYDIT  DSF   + WVKEL++HG  +IVMA+ GNK DL + REVP +D  EYAE  G   +ETSAK A NI +LF+ I++++P
Sbjct:   62 AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.735e-26
Identity = 57/106 (53.77%), Postives = 77/106 (72.64%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQER+ ALAP+YYRG      VYDIT  ++F+  + WVKEL++HG P+IV+A+ GNK DL + REV  +D  +YA+     F+ETSAK A NIN+LF EI++R+P
Sbjct:   62 AGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB22A_MOUSE (Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 6.094e-26
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQER+ ALAP+YYRG      VYDIT  ++F+  + WV+EL++HG P IV+A+ GNK DL + REV  +D  +YA+     F+ETSAK A NIN+LF EI++R+P
Sbjct:   62 AGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB22A_CANFA (Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.358e-25
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQE + ALAP+YYRG      VYDIT  ++F+  + WVKEL++HG P+IV+A+ GNK DL + REV  +D  +YA+     F+ETSAK A NIN+LF EI++R+P
Sbjct:   62 AGQEAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 54/109 (49.54%), Postives = 77/109 (70.64%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHE---KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQER+A+LAP+YYR       VYD+T P SF KA+ WVKEL +  S DI++ALVGNK D+ +   +R+V  ++G + AE+ G+ F ETSAKT +N+N +F  I +++P
Sbjct:   64 AGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 172          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: YPT5_SCHPO (GTP-binding protein ypt5 OS=Schizosaccharomyces pombe GN=ypt5 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.729e-24
Identity = 57/107 (53.27%), Postives = 70/107 (65.42%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADL-HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQERY +LAP+YYR       VYDIT   S  KA+ W+KELQ+     IV+AL GNK DL  E+R V   D   YA +  + F ETSAKTA+N+N+LF  IAK+LP
Sbjct:   72 AGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLP 178          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5B_DICDI (Putative ras-related protein Rab-5B OS=Dictyostelium discoideum GN=rab5B PE=5 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.649e-21
Identity = 53/106 (50.00%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEY-AEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQERY +L P+YYRG      VYDIT  ++F   + WV ELQKH SP++++AL GNK DL   REV   +   Y +E     F ETSA +  NIN+LF EI +RL
Sbjct:  105 AGQERYRSLTPMYYRGAAAAVVVYDITKKNTFETLKRWVSELQKHASPNLILALAGNKVDL-PNREVQVDEVNRYISELGNAIFFETSAASGQNINELFTEICRRL 209          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB17_MOUSE (Ras-related protein Rab-17 OS=Mus musculus GN=Rab17 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.649e-21
Identity = 50/106 (47.17%), Postives = 73/106 (68.87%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE+Y ++  LY+RG      VYDIT  DSF+KAQ W+++L+K   P ++V+ LVGNK DL E+REV  Q+G E+AE   + F+ETSAK    ++++F  +A+ L
Sbjct:   75 AGQEKYQSVCHLYFRGANAALLVYDITRKDSFHKAQQWLEDLEKEFQPGEVVVMLVGNKTDLGEEREVTFQEGKEFAESKSLLFMETSAKLNYQVSEIFNTVAQEL 180          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RAB31_RAT9.401e-2754.72Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
RAB31_MOUSE9.401e-2754.72Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
RAB31_HUMAN2.094e-2654.72Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
RB22A_HUMAN2.735e-2653.77Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
RB22A_MOUSE6.094e-2652.83Ras-related protein Rab-22A OS=Mus musculus GN=Rab... [more]
RB22A_CANFA1.358e-2552.83Ras-related protein Rab-22A OS=Canis familiaris GN... [more]
VPS21_YEAST2.560e-2449.54Vacuolar protein sorting-associated protein 21 OS=... [more]
YPT5_SCHPO9.729e-2453.27GTP-binding protein ypt5 OS=Schizosaccharomyces po... [more]
RAB5B_DICDI2.649e-2150.00Putative ras-related protein Rab-5B OS=Dictyosteli... [more]
RAB17_MOUSE2.649e-2147.17Ras-related protein Rab-17 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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