DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = -1
Query:  197 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 502
            AGQER+  +   YYRG      +YD+T   SF   + W + + +H + D  + LVGNK D    R+V  + G E A K  + F+E SAK+ +N++ +F E+A
Sbjct:   71 AGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELA 172          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB12_CANFA (Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYA-EKNGMFFIETSAKTADNINQLF----EEIAKRLP 502
            AGQER+ ++   YYR       VYDIT  ++F+    W+K + K+ S D  + LVGNK D    RE+  Q G ++A E  GM F E SAK   N++++F    ++I K++P
Sbjct:   63 AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAHEITGMRFCEASAKDNFNVDEIFLKLVDDILKKMP 173          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RABC_DICDI (Ras-related protein RabC OS=Dictyostelium discoideum GN=rabC PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  206 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 502
            AGQER+ ++   +YRG      VYD+T P SF + + WV+++ ++    +++ LVGNK+D+  +R+V  + G E AE+    F+E SAK  + + Q+F+
Sbjct:   65 AGQERFKSITQTFYRGSHGVIVVYDVTDPKSFERCKNWVEDINQYTQDGMIIILVGNKSDMVAQRKVTFEQGQEMAEQLKTKFLEVSAKENNGVTQVFD 163          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRLP 502
            AGQER+  +   YYRG      VYDIT+  SF     W++ + +H + D+   L+GNK D+ +KR V    G + A ++ + F ETSAK   NI + F    E+I ++ P
Sbjct:   66 AGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDILQKTP 175          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.137e-14
Identity = 43/104 (41.35%), Postives = 59/104 (56.73%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHE-KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AGQER+  +   YYRG      VYDIT   SFN  + W++ +++H S ++   LVGNK DL E KR V    G   A++ G  F ETSAK   ++ + F  +AK
Sbjct:   70 AGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAK 173          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.137e-14
Identity = 39/103 (37.86%), Postives = 62/103 (60.19%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AGQER+  +   YYRG      VYD+T   +F   + W K + +H + +  + LVGNK+D+ + R V  + G   A++ G+ FIE+SAK  DN+N++F  +A+
Sbjct:   77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDM-DTRVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLAR 178          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB26_DROME (Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 5.351e-14
Identity = 36/106 (33.96%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLH-EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ ++   YYR       +YD+T+  +++  + W+ E++++   D+V+ L+GNKAD    +R+V  +DG     ++ + F+ETSAKT  N+   F  +A++L
Sbjct:  248 AGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGNKADCSGSERQVKREDGERLGREHNVPFMETSAKTGLNVELSFTAVARQL 353          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.351e-14
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRLP 502
            AGQER+  +   YYRG      VYDIT+  SF     W++ + +H + D+   L+ NK D+  KR VP   G + A ++ + F ETSAK   NI + F    E+I ++ P
Sbjct:   66 AGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDHKRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTP 175          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB27A_RAT (Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.192e-13
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ----LFEEIAKRLPR 502
            AGQER+ +L   ++R       ++D+T+  SF   + W+ +LQ H    +PDIV  L GNK+DL ++R V  ++  E AEK G+ + ETSA    NI+Q    L + I KR+ R
Sbjct:   76 AGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV--LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRMER 187          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB27A_HUMAN (Ras-related protein Rab-27A OS=Homo sapiens GN=RAB27A PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.192e-13
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ----LFEEIAKRLPR 502
            AGQER+ +L   ++R       ++D+T+  SF   + W+ +LQ H    +PDIV  L GNK+DL ++R V  ++ I  AEK G+ + ETSA    NI+Q    L + I KR+ R
Sbjct:   76 AGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV--LCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRMER 187          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
SEC4_CANAL1.078e-1437.25Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB12_CANFA1.078e-1438.74Ras-related protein Rab-12 (Fragment) OS=Canis fam... [more]
RABC_DICDI1.408e-1436.36Ras-related protein RabC OS=Dictyostelium discoide... [more]
RAB10_DISOM1.408e-1437.27Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
YPTV2_VOLCA3.137e-1441.35GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
SEC4_CANGA3.137e-1437.86Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB26_DROME5.351e-1433.96Ras-related protein Rab-26 OS=Drosophila melanogas... [more]
RAB10_RAT5.351e-1437.27Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RB27A_RAT1.192e-1338.60Ras-related protein Rab-27A OS=Rattus norvegicus G... [more]
RB27A_HUMAN1.192e-1338.60Ras-related protein Rab-27A OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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