DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB43L_HUMAN (Putative Rab-43-like protein ENSP00000330714 OS=Homo sapiens PE=5 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.557e-13
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 502
            AGQER+  +   YYR        YDIT   SF     W+++++K+   +IV  L+GNK+DL E REV   +    AE   +   IETSAK + N+ + F  +A  L
Sbjct:   44 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 149          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.557e-13
Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQER+  +   +YRG       YD+T   ++N  + W++E+Q++    +   LVGNK DL +++ V      EYA+  G+ F+E SA T  N+ + F  +A  + R
Sbjct:   63 AGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIYR 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.557e-13
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 502
            AGQER+  +   YYR        YDIT   SF     W+++++K+   +IV  L+GNK+DL E REV   +    AE   +   IETSAK + N+ + F  +A  L
Sbjct:   75 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB27B_MOUSE (Ras-related protein Rab-27B OS=Mus musculus GN=Rab27b PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.033e-13
Identity = 44/114 (38.60%), Postives = 67/114 (58.77%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ----LFEEIAKRLPR 502
            AGQER+ +L   ++R       ++D+TS  SF   + W+ +LQ +    +PDIV  L+GNKADL ++REV  +   E AEK G+ + ETSA T  N+ +    L + I KR+ +
Sbjct:   76 AGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 187          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.033e-13
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 502
            AGQER+  +   YYR        YDI+   +F     W+++++K+   +IV  L+GNK+DL + REVP  +    AE   +   IETSAK + N+ + F  +A  L
Sbjct:   73 AGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADLREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB12_RAT (Ras-related protein Rab-12 (Fragment) OS=Rattus norvegicus GN=Rab12 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.033e-13
Identity = 40/111 (36.04%), Postives = 63/111 (56.76%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLF----EEIAKRLP 502
            AGQER+ ++   YYR       VYDIT  ++F+    W+K + K+ S D  + L GNK D    RE+  Q G ++A++  GM   E SAK   N++++F    ++I K++P
Sbjct:   52 AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLAGNKLDCETDREISRQQGEKFAQQITGMRLSEPSAKDNFNVDEIFLKLVDDILKKMP 162          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB27B_RAT (Ras-related protein Rab-27B OS=Rattus norvegicus GN=Rab27b PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 2.656e-13
Identity = 44/114 (38.60%), Postives = 67/114 (58.77%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ----LFEEIAKRLPR 502
            AGQER+ +L   ++R       ++D+TS  SF   + W+ +LQ +    +PDIV  L+GNKADL ++REV  +   E AEK G+ + ETSA T  N+ +    L + I KR+ +
Sbjct:   76 AGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV--LIGNKADLLDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 187          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.656e-13
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 502
            AGQER+  +   YYR        YDI+   +F     W+++++K+   +IV  L+GNK+DL + REVP  +    AE   +   IETSAK + N+ + F  +A  L
Sbjct:   73 AGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RYL2_YARLI (Ras-like GTP-binding protein RYL2 OS=Yarrowia lipolytica GN=RYL2 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEK----REVPAQDGIEYAE---KNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ ++AP+YYR        YD+TS  SF+    W+ EL+++ S DI++ +VG K DL +     REVP +  +EYA    ++     E SAK  + + ++FE I  +L
Sbjct:   62 AGQERFRSMAPIYYRSASCGILCYDVTSRASFDAMHLWLLELKQNLSSDIIIHIVGTKVDLVKDEPSLREVPFEQCVEYASEWLQDDSCCHEISAKDDEGVEEVFEVIITKL 173          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB27A_CANFA (Ras-related protein Rab-27A OS=Canis familiaris GN=RAB27A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ----LFEEIAKRLPR 502
            AGQER+ +L   ++R       ++D+T+  SF   + W+ +LQ H    +PDIV  L GNK+DL ++R V  +D    AEK G+ + ETSA    NI+Q    L + I KR+ R
Sbjct:   76 AGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV--LCGNKSDLEDQRVVKEEDARGLAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRMER 187          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RB43L_HUMAN1.557e-1337.74Putative Rab-43-like protein ENSP00000330714 OS=Ho... [more]
RABG2_DICDI1.557e-1333.64Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAB43_HUMAN1.557e-1337.74Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RB27B_MOUSE2.033e-1338.60Ras-related protein Rab-27B OS=Mus musculus GN=Rab... [more]
RAB43_RAT2.033e-1335.85Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB12_RAT2.033e-1336.04Ras-related protein Rab-12 (Fragment) OS=Rattus no... [more]
RB27B_RAT2.656e-1338.60Ras-related protein Rab-27B OS=Rattus norvegicus G... [more]
RAB43_MOUSE2.656e-1335.85Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RYL2_YARLI3.468e-1337.50Ras-like GTP-binding protein RYL2 OS=Yarrowia lipo... [more]
RB27A_CANFA3.468e-1338.60Ras-related protein Rab-27A OS=Canis familiaris GN... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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