DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13
Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AGQERY  +   YYR       VYDI+S  S+     WV ++ ++    +   L+GNKAD  +KR+V  + G + A++ GM F ETSA T  NI + F  + +
Sbjct:   65 AGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTE 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13
Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AGQERY  +   YYR       VYDI+S  S+     WV ++ ++    +   L+GNKAD  +KR+V  + G + A++ GM F ETSA T  NI + F  + +
Sbjct:   65 AGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTE 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13
Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AGQERY  +   YYR       VYDI+S  S+     WV ++ ++    +   L+GNKAD  +KR+V  + G + A++ GM F ETSA T  NI + F  + +
Sbjct:   65 AGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTE 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB27B_HUMAN (Ras-related protein Rab-27B OS=Homo sapiens GN=RAB27B PE=1 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 4.530e-13
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = -1
Query:  200 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 502
            AGQER+ +L   ++R       ++D+TS  SF   + W+ +LQ +    +PDIV  L+GNKADL ++REV  +   E A+K G+ + ETSA T  N+ +  E +
Sbjct:   76 AGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 177          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB27A_MOUSE (Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.530e-13
Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN----QLFEEIAKRLPR 502
            AGQER+ +L   ++R       ++D+T+  SF   + W+ +LQ H    +PDIV  L GNK+DL ++R V  ++  E AEK G+ + ETSA    NI+     L + I KR+ R
Sbjct:   76 AGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV--LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMER 187          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.530e-13
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AGQERY  +   YYR       VYDI+S  S+     WV ++ ++    +   L+GNKAD  +KR+V  + G + A + GM F ETSA T  NI + F  + +
Sbjct:   65 AGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAREYGMDFYETSACTNLNIKESFTRLTE 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: YPTV3_VOLCA (GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.916e-13
Identity = 37/107 (34.58%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQX-WVKELQKHGSPD-IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+  L   YYRG      VYD+T  D+F   +  W++E   + + +  +  +V NK DL  +R+V +++G ++A ++G  F+ETSA+    + Q FEE+  ++
Sbjct:   66 AGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKI 172          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB39B_MOUSE (Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.916e-13
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AGQER+ ++   YYR       ++DIT+  SF     W++E + H  P  IV  LVG+K DL  +R+V   +  + A   GM +IETSA+ A N+ + F ++ +
Sbjct:   66 AGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTR 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB39B_HUMAN (Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.916e-13
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AGQER+ ++   YYR       ++DIT+  SF     W++E + H  P  IV  LVG+K DL  +R+V   +  + A   GM +IETSA+ A N+ + F ++ +
Sbjct:   66 AGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTR 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB39B_BOVIN (Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.916e-13
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AGQER+ ++   YYR       ++DIT+  SF     W++E + H  P  IV  LVG+K DL  +R+V   +  + A   GM +IETSA+ A N+ + F ++ +
Sbjct:   66 AGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTR 169          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RAB15_RAT3.468e-1337.86Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB15_MOUSE3.468e-1337.86Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]
RAB15_HUMAN3.468e-1337.86Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RB27B_HUMAN4.530e-1338.46Ras-related protein Rab-27B OS=Homo sapiens GN=RAB... [more]
RB27A_MOUSE4.530e-1337.72Ras-related protein Rab-27A OS=Mus musculus GN=Rab... [more]
RAB15_BOVIN4.530e-1337.86Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]
YPTV3_VOLCA5.916e-1334.58GTP-binding protein yptV3 OS=Volvox carteri GN=YPT... [more]
RB39B_MOUSE5.916e-1336.54Ras-related protein Rab-39B OS=Mus musculus GN=Rab... [more]
RB39B_HUMAN5.916e-1336.54Ras-related protein Rab-39B OS=Homo sapiens GN=RAB... [more]
RB39B_BOVIN5.916e-1336.54Ras-related protein Rab-39B OS=Bos taurus GN=RAB39... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
back to top