DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB4A_ECHMU (Probable Ras-related protein Rab-4A OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.916e-13
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHE-KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ ++A  YY        VYDIT+  SF   + W+ + +   +P +V+ LVGNK DL +   +V   +   +A++NG+ FIETSA T +NI+  F    + L
Sbjct:   66 AGQERFRSMARSYYHDAVGTLLVYDITNRTSFGAVEQWLGDARHLATPGVVVILVGNKKDLRDTDGQVTHWEANTFAQENGLQFIETSALTGENIDDAFTSCVRVL 171          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.009e-12
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQER+  +   YYRG      VYD+TS +SF   + W+ E+ ++   D+   LVGNK D  E++ V  +D  ++A + G+   ETSAK   N+ ++F  I + + R
Sbjct:   65 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 170          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.009e-12
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQER+  +   YYRG      VYD+TS +SF   + W+ E+ ++   D+   LVGNK D  E++ V  +D  ++A + G+   ETSAK   N+ ++F  I + + R
Sbjct:   65 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 170          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.009e-12
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQER+  +   YYRG      VYD+TS +SF   + W+ E+ ++   D+   LVGNK D  E++ V  +D  ++A + G+   ETSAK   N+ ++F  I + + R
Sbjct:   65 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 170          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB39A_MOUSE (Ras-related protein Rab-39A OS=Mus musculus GN=Rab39 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.721e-12
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = -1
Query:  209 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 502
            AGQER+ ++   YYR       V+DIT+  SF   + W++E + H  P  IV  LVG+K DL  +R+V  ++    +   GM +IETSAK A N+ + F
Sbjct:   70 AGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMHVQPFQIVFLLVGHKCDLASQRQVSREEAERLSTDCGMKYIETSAKDATNVEESF 168          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB27B_BOVIN (Ras-related protein Rab-27B OS=Bos taurus GN=RAB27B PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 2.248e-12
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = -1
Query:  200 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 502
            AGQER+ +L   ++R       ++D+TS  SF   + W+ +LQ +    +PDIV  L+GNKADL ++REV  +   + AEK  + + ETSA T  N+ +  E +
Sbjct:   76 AGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV--LIGNKADLPDQREVNERQARDLAEKYSIPYFETSAATGQNVEKAVETL 177          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB24_MOUSE (Ras-related protein Rab-24 OS=Mus musculus GN=Rab24 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.248e-12
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHE----KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AG ERY A++ +YYRG       YD+T   SF +A+ WVKEL+        + L G K+DL E    +R V   D  +YA+       ETS+KT  ++++LF+++A+
Sbjct:   65 AGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSL-EEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAE 170          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB24_HUMAN (Ras-related protein Rab-24 OS=Homo sapiens GN=RAB24 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.248e-12
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHE----KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AG ERY A++ +YYRG       YD+T   SF +A+ WVKEL+        + L G K+DL E    +R V   D  +YA+       ETS+KT  ++++LF+++A+
Sbjct:   65 AGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSL-EEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAE 170          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: CPAS2_DICDI (Circularly permutated Ras protein 2 OS=Dictyostelium discoideum GN=cpras2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.248e-12
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPD--IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AGQE Y+A+   YYR        Y I S  SF   Q +  +L +    D    + ++G KADL ++R+V  +DG+ YA   G  FIETSAKT  N++  F  ++K
Sbjct: 2855 AGQEEYSAMRDQYYRHGDAFILAYSINSRSSFQNLQSYYNQLCRIKDCDSYACVIVIGTKADLEDQRQVSKEDGLLYARSLGAAFIETSAKTGFNVHTAFAIVSK 2959          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB33A_MOUSE (Ras-related protein Rab-33A OS=Mus musculus GN=Rab33a PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.835e-12
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  188 AGQERYA-ALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIV-MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA---KTADNINQLFEEIAKRL 502
            AGQER+  ++   YYR       VYD+T   SF   + W++E   H  P +V   LVGNK DL E+ +VP+   +++A+ + M   ETSA   K + N+  +F  +A RL
Sbjct:   93 AGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRL 202          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RAB4A_ECHMU5.916e-1337.74Probable Ras-related protein Rab-4A OS=Echinococcu... [more]
RAB35_RAT1.009e-1236.45Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE1.009e-1236.45Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN1.009e-1236.45Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
RB39A_MOUSE1.721e-1239.39Ras-related protein Rab-39A OS=Mus musculus GN=Rab... [more]
RB27B_BOVIN2.248e-1237.50Ras-related protein Rab-27B OS=Bos taurus GN=RAB27... [more]
RAB24_MOUSE2.248e-1237.38Ras-related protein Rab-24 OS=Mus musculus GN=Rab2... [more]
RAB24_HUMAN2.248e-1237.38Ras-related protein Rab-24 OS=Homo sapiens GN=RAB2... [more]
CPAS2_DICDI2.248e-1238.10Circularly permutated Ras protein 2 OS=Dictyosteli... [more]
RB33A_MOUSE3.835e-1237.27Ras-related protein Rab-33A OS=Mus musculus GN=Rab... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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