DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.709e-21
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  200 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 502
            AGQERY A+   YYRG      VYDIT   +F+    W++EL+ H   +IV+ L+GNK DL  +R+VP +D  E+AEK G+FF+ETSA  A N+   F  +
Sbjct:   74 AGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTV 174          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.315e-20
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYD+T   +F  A  W+KEL+ H  P+IV+ L+GNK+DL     VP +DG  +AE+  ++F+ETSA  A N+   F E+  ++ R
Sbjct:   70 AGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYR 176          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.315e-20
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYD+T P +F     W+KEL+ H   +IV+ L+GNK DL   R V  +D   YAEK G+ FIETSA  A N+ + F+ I   + R
Sbjct:   69 AGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYR 175          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.243e-20
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = -1
Query:  209 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 502
            AGQERY A+   YYRG      VYDIT   +F+    W++EL+ H   +IV+ L+GNK DL ++R VP +D  E+A+K G+FF+ETSA  A N+   F
Sbjct:   72 AGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAF 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB21_GEOCY (Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.243e-20
Identity = 49/105 (46.67%), Postives = 67/105 (63.81%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQERY AL P+YYR       VYDIT  DSF+KA+ W+KEL++     + + +VGNK DL  +R V  +D +EYAE  G     TSAK +  + +LF ++AKR+
Sbjct:   73 AGQERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELKRMLGDKVTLCIVGNKIDLDRQRTVSEKDALEYAESVGAKHYYTSAKQSKGVAELFLDLAKRI 177          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.243e-20
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYD+T   +F     W+KEL+ H  P+IV+ LVGNK+DL     VP +DG  YAE+  + F+ETSA  A N+   F E+  ++ R
Sbjct:   70 AGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYR 176          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.929e-20
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE++ ++   YYRG      VYDIT  DSF     W+ + +K  S D+   L+GNKADL   R+V   +  E+AEKNG+ F ETSAKTA N+++ FE+  +++
Sbjct:   81 AGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQI 185          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.997e-20
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYD+T   +F  A  W+KEL+ H  P+IV+ L+GNK+DL     V  +DG  +AEK  ++F+ETSA  A N+   F E+  ++ R
Sbjct:   70 AGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYR 176          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.454e-19
Identity = 43/105 (40.95%), Postives = 69/105 (65.71%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE + ++   YYRG      VYDIT  D+FN    W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:   63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.454e-19
Identity = 43/105 (40.95%), Postives = 69/105 (65.71%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE + ++   YYRG      VYDIT  D+FN    W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:   63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RB11A_LOTJA7.709e-2146.53Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11D_LOTJA1.315e-2043.93Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA2A_ARATH1.315e-2045.79Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB11D_TOBAC2.243e-2046.94Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RAB21_GEOCY2.243e-2046.67Ras-related protein Rab-21 OS=Geodia cydonium GN=R... [more]
RAA1B_ARATH2.243e-2044.86Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RAB2B_DICDI2.929e-2043.81Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RB11E_LOTJA4.997e-2043.93Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAB2A_RAT1.454e-1940.95Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2A_RABIT1.454e-1940.95Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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