DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RALB_HUMAN (Ras-related protein Ral-B OS=Homo sapiens GN=RALB PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.457e-11
Identity = 36/107 (33.64%), Postives = 66/107 (61.68%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPD--IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE YAA+   Y+R       V+ IT  +SF     + +++ +  + +  I + +VGNK+DL E+R+VP ++    AE+ G+ ++ETSAKT  N++++F ++ + +
Sbjct:   70 AGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: YPT4_SCHPO (GTP-binding protein ypt4 OS=Schizosaccharomyces pombe GN=ypt4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.903e-11
Identity = 34/106 (32.08%), Postives = 60/106 (56.60%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEY-AEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE++ ++A  YYRG      VYD+T+ DSF +   W+ +++      I + L G+K+DL  +R+V  ++  E+ +EK+     ETS+ T  N+ + F  +   +
Sbjct:   70 AGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTI 175          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RALB_MOUSE (Ras-related protein Ral-B OS=Mus musculus GN=Ralb PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.903e-11
Identity = 37/107 (34.58%), Postives = 65/107 (60.75%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPD--IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE YAA+   Y+R       V+ IT  +SF     + +++ +  S +  I + +VGNK+DL E+R+VP  +    AE+ G+ ++ETSAKT  N++++F ++ + +
Sbjct:   70 AGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKSEEDKIPLLVVGNKSDLEERRQVPVDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB40B_MOUSE (Ras-related protein Rab-40B OS=Mus musculus GN=Rab40b PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            +GQ R+  +   Y RG      VYDI +  SF+    W+KE+ +H +P +   LVGN+  L  KR+VP +    YAE+ G+ F E S     NI + F E+A+
Sbjct:   71 SGQGRFCTIFRSYSRGAQGVVLVYDIANRWSFDGINRWIKEIDEH-APGVPKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELAR 172          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB40B_HUMAN (Ras-related protein Rab-40B OS=Homo sapiens GN=RAB40B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            +GQ R+  +   Y RG      VYDI +  SF+    W+KE+ +H +P +   LVGN+  L  KR+VP +    YAE+ G+ F E S     NI + F E+A+
Sbjct:   71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELAR 172          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RASL_COLTR (Ras-like protein OS=Colletotrichum trifolii GN=RAS PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIV-MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQE Y+A+   Y R       VY ITS  SF +   + +++ +    D   M +VGNK DL  +REV  Q+G   A+  G  FIETSAK+  N+++ F +I + + R
Sbjct:   64 AGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEITTFQQQILRVKDKDYFPMVVVGNKCDLEGEREVTRQEGEALAKSFGCKFIETSAKSRINVDKAFYDIVREIRR 171          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RALB_RAT (Ras-related protein Ral-B OS=Rattus norvegicus GN=Ralb PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 36/107 (33.64%), Postives = 66/107 (61.68%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPD--IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE YAA+   Y+R       V+ IT  +SF     + +++ +  + +  I + +VGNK+DL E+R+VP ++    AE+ G+ ++ETSAKT  N++++F ++ + +
Sbjct:   70 AGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RABZ_DICDI (Ras-related protein RabZ OS=Dictyostelium discoideum GN=rabZ PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 32/105 (30.48%), Postives = 59/105 (56.19%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE++ AL+  YYR        YDI +  +F+    W++E+ +   P++ + ++ NK DL+EKR V   +  ++A+   +  IE SAK +  + + F ++A  +
Sbjct:  108 AGQEKFRALSQSYYRCADGIMLFYDIANQKTFDNVGRWLEEVHRLAGPNVPILIIANKCDLNEKRVVNFNNAKKFADDKNIPIIEVSAKESLGVEEAFIKLASEI 212          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAS1_YEAST (Ras-like protein 1 OS=Saccharomyces cerevisiae GN=RAS1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11
Identity = 36/104 (34.62%), Postives = 62/104 (59.62%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIV-MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AGQE Y+A+   Y R       VY +TS +SF++   + +++Q+    D + + +VGNK DL  +R+V  +DG+  A++    F+ETSAK A N+++ F  + +
Sbjct:   66 AGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQIQRVKDSDYIPVVVVGNKLDLENERQVSYEDGLRLAKQLNAPFLETSAKQAINVDEAFYSLIR 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAS2_YEAST (Ras-like protein 2 OS=Saccharomyces cerevisiae GN=RAS2 PE=1 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 37/104 (35.58%), Postives = 60/104 (57.69%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIV-MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AGQE Y+A+   Y R       VY ITS  S ++   + +++ +    D V + +VGNK+DL  +++V  QDG+  A++    F+ETSAK A N+ + F  +A+
Sbjct:   66 AGQEEYSAMREQYMRNGEGFLLVYSITSKSSLDELMTYYQQILRVKDTDYVPIVVVGNKSDLENEKQVSYQDGLNMAKQMNAPFLETSAKQAINVEEAFYTLAR 169          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RALB_HUMAN1.457e-1133.64Ras-related protein Ral-B OS=Homo sapiens GN=RALB ... [more]
YPT4_SCHPO1.903e-1132.08GTP-binding protein ypt4 OS=Schizosaccharomyces po... [more]
RALB_MOUSE1.903e-1134.58Ras-related protein Ral-B OS=Mus musculus GN=Ralb ... [more]
RB40B_MOUSE2.486e-1136.89Ras-related protein Rab-40B OS=Mus musculus GN=Rab... [more]
RB40B_HUMAN2.486e-1136.89Ras-related protein Rab-40B OS=Homo sapiens GN=RAB... [more]
RASL_COLTR2.486e-1137.96Ras-like protein OS=Colletotrichum trifolii GN=RAS... [more]
RALB_RAT2.486e-1133.64Ras-related protein Ral-B OS=Rattus norvegicus GN=... [more]
RABZ_DICDI2.486e-1130.48Ras-related protein RabZ OS=Dictyostelium discoide... [more]
RAS1_YEAST3.246e-1134.62Ras-like protein 1 OS=Saccharomyces cerevisiae GN=... [more]
RAS2_YEAST4.240e-1135.58Ras-like protein 2 OS=Saccharomyces cerevisiae GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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