DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAS1_RHIRA (Ras-like protein 1 OS=Rhizomucor racemosus GN=RAS1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIV-MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQE Y+A+   Y R       VY ITS  SF +   + +++ +    D   M LVGNK DL   R+V +Q+G + A+  G  FIETSAK   N+++ F E+ + + R
Sbjct:   66 AGQEEYSAMREQYMRNGEGFLLVYSITSRLSFEEITTFYQQICRVKDRDYFPMVLVGNKCDLEGDRQVSSQEGRDLAKNFGCQFIETSAKQRINVDEAFFEVVRDIRR 173          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RALA_DROME (Ras-related protein Ral-a OS=Drosophila melanogaster GN=Rala PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 37/106 (34.91%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKE-LQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE YAA+   Y+R       V+ IT  +SF   Q + ++ L+      I   LVGNK DL++KR+VP  +    A++  + ++ETSAKT +N++++F ++ + +
Sbjct:   67 AGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPYVETSAKTRENVDKVFFDLMREI 172          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAS_BOTFU (Ras-like protein OS=Botryotinia fuckeliana GN=ras1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIV-MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQE Y+A+   Y R       VY ITS  SF +   + +++ +    D   + +VGNK DL  +R+V  Q+G + A+  G  FIETSAK+  N++  F +I + + R
Sbjct:   64 AGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLEGERQVSKQEGQQLADDFGCKFIETSAKSRINVDNAFYDIVREIRR 171          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RASX_DICDI (Ras-like protein rasX OS=Dictyostelium discoideum GN=rasX PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQ+   A+   + R       VY +TS  SF++   + +++ +   S D+ + ++GNK+DL ++R+V  Q+G + A   GM F+E SAKT  NI ++F E  + + R
Sbjct:   65 AGQDELTAMRDQWIRSCEGFVLVYSVTSRSSFDQIAFFKEQINRVLDSDDVPIMMIGNKSDLDDERQVTYQEGKDLARCFGMSFMEVSAKTRSNIEEVFNETVRCVKR 172          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAPA_DICDI (Ras-related protein rapA OS=Dictyostelium discoideum GN=rapA PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKE-LQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEEIAKRLPR 502
            AG E++ A+  LY +       VY I S  +FN+     ++ L+     D+ M LVGNK DLH++R +  + G E A K G  +F+E SAK   N+ Q+F  + +++ R
Sbjct:   61 AGTEQFTAMRDLYMKNGQGFVLVYSIISNSTFNELPDLREQILRVKDCEDVPMVLVGNKCDLHDQRVISTEQGEELARKFGDCYFLEASAKNKVNVEQIFYNLIRQINR 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RALBA_XENLA (Ras-related protein ralB-A OS=Xenopus laevis GN=ralb-A PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 35/107 (32.71%), Postives = 65/107 (60.75%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPD--IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE YAA+   Y+R       V+ IT  +SF     + +++ +  + +  I + +VGNK+DL ++R+VP  +    AE+ G+ ++ETSAKT  N++++F ++ + +
Sbjct:   70 AGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLIVGNKSDLEDRRQVPMDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = -1
Query:  194 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 502
            AGQER+       YRG      VYD+T   SF     W++E++++   +++  ++GNK+D+  ++ V      E+A+   + F ETSAK A NI   F  + K
Sbjct:   65 AGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYARDNVIKMIIGNKSDMISQKVVDPFLAQEFADSLDITFKETSAKQAINIEDAFISLVK 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB33_CIOIN (Putative Ras-related protein Rab-33 OS=Ciona intestinalis GN=COS41.2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = -1
Query:  188 AGQERYA-ALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT---ADNINQLFEEIAKRL 502
            AGQER+  ++ P YYR        YD+T   SF     W++E +++   + +I   LVGNK DL ++ EV       +A+ N M   ETSAK      NI  +F  +A +L
Sbjct:   72 AGQERFRKSMVPHYYRNVHAVVFTYDVTKGRSFQGLPSWIEECERYSLNASEIPRILVGNKCDLKDQAEVDTNSATRFADANSMPLFETSAKADSEMGNIEAIFLTVAHKL 182          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RAS1_RHIRA4.240e-1137.96Ras-like protein 1 OS=Rhizomucor racemosus GN=RAS1... [more]
RALA_DROME5.537e-1134.91Ras-related protein Ral-a OS=Drosophila melanogast... [more]
RAS_BOTFU9.445e-1136.11Ras-like protein OS=Botryotinia fuckeliana GN=ras1... [more]
RASX_DICDI9.445e-1133.33Ras-like protein rasX OS=Dictyostelium discoideum ... [more]
RAPA_DICDI9.445e-1134.86Ras-related protein rapA OS=Dictyostelium discoide... [more]
RALBA_XENLA9.445e-1132.71Ras-related protein ralB-A OS=Xenopus laevis GN=ra... [more]
RABA_DICDI9.445e-1133.01Ras-related protein RabA OS=Dictyostelium discoide... [more]
RAB33_CIOIN9.445e-1135.14Putative Ras-related protein Rab-33 OS=Ciona intes... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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