DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.239e-19
Identity = 44/105 (41.90%), Postives = 67/105 (63.81%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ ++   YYR        YDIT  +SF     W++E++++ S  ++  LVGNK DL E+REV  Q   E++E   M+++ETSAK +DN+ +LF ++A RL
Sbjct:   66 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 3.239e-19
Identity = 44/105 (41.90%), Postives = 67/105 (63.81%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ ++   YYR        YDIT  +SF     W++E++++ S  ++  LVGNK DL E+REV  Q   E++E   M+++ETSAK +DN+ +LF ++A RL
Sbjct:   66 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.239e-19
Identity = 44/105 (41.90%), Postives = 67/105 (63.81%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ ++   YYR        YDIT  +SF     W++E++++ S  ++  LVGNK DL E+REV  Q   E++E   M+++ETSAK +DN+ +LF ++A RL
Sbjct:   66 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.239e-19
Identity = 43/105 (40.95%), Postives = 69/105 (65.71%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE + ++   YYRG      VYDIT  D+FN    W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:   63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEI 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RAB30_MOUSE3.239e-1941.90Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN3.239e-1941.90Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN3.239e-1941.90Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB2_LYMST3.239e-1940.95Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RB11A_RAT4.230e-1943.93Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT4.230e-1943.93Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB4.230e-1943.93Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG4.230e-1943.93Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE4.230e-1943.93Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN4.230e-1943.93Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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