DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 41/105 (39.05%), Postives = 68/105 (64.76%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE + ++   YYRG      VYDIT  D+FN    W+K+ + + + ++ + L+GNK+D+  KR V  ++G ++A++NG+ F+ETSAKTA N+ + F   A ++
Sbjct:   62 AGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKI 166          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB21_BOVIN (Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 49/105 (46.67%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ AL P+YYR       VYDIT  DSF K + WVKEL+K    +I + +VGNK DL ++R V  Q+   YAE  G     TSAK    I +LF ++ KR+
Sbjct:   73 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 177          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.524e-19
Identity = 46/107 (42.99%), Postives = 64/107 (59.81%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDIT   SF+    W++EL+ H   +IV+ L+GNK+DL   R VP +D  E+AE+  +FF+ETSA  + N+   F  +   + R
Sbjct:   75 AGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYR 181          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.524e-19
Identity = 47/101 (46.53%), Postives = 62/101 (61.39%), Query Frame = -1
Query:  200 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 502
            AGQERY A+   YYRG      VYDIT   +F+  Q W++EL+ H   +IV+ + GNK+DL   R V  +DG   AEK G+ F+ETSA  A NI + F+ I
Sbjct:   69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTI 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB6A_CAEEL (Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.524e-19
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQER+ +L P Y R       VYDIT+ +SF++   WV +++     D+++ LVGNK DL +KR+V  +DG + A    + FIETSAK   N+ QLF +IA  LP
Sbjct:   68 AGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALP 173          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.524e-19
Identity = 43/107 (40.19%), Postives = 70/107 (65.42%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQE + ++   YYRG      VYDIT  ++FN    W+++ ++H S ++V+ L+GNK+DL  +R+V  ++G  +A ++G+ F+ETSAKTA N+ + F   AK + R
Sbjct:   63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB21_HUMAN (Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 5.524e-19
Identity = 49/105 (46.67%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ AL P+YYR       VYDIT  DSF K + WVKEL+K    +I + +VGNK DL ++R V  Q+   YAE  G     TSAK    I +LF ++ KR+
Sbjct:   76 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 180          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB21_CANFA (Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 5.524e-19
Identity = 49/105 (46.67%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ AL P+YYR       VYDIT  DSF K + WVKEL+K    +I + +VGNK DL ++R V  Q+   YAE  G     TSAK    I +LF ++ KR+
Sbjct:   74 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 178          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RB11A_CHICK4.230e-1943.93Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA4.230e-1943.93Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RAB2A_DICDI4.230e-1939.05Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB21_BOVIN4.230e-1946.67Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 ... [more]
RGP1_ORYSJ5.524e-1942.99Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB2BV_BETVU5.524e-1946.53Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAB6A_CAEEL5.524e-1944.34Ras-related protein Rab-6.1 OS=Caenorhabditis eleg... [more]
RAB2B_HUMAN5.524e-1940.19Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB21_HUMAN5.524e-1946.67Ras-related protein Rab-21 OS=Homo sapiens GN=RAB2... [more]
RAB21_CANFA5.524e-1946.67Ras-related protein Rab-21 OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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