DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB6B_MOUSE (Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 44/106 (41.51%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQER+ +L P Y R       VYDIT+ +SF +   W+ +++     D+++ LVGNK DL +KR++  ++G + A++  + FIETSAKT  N+ QLF  +A  LP
Sbjct:   70 AGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALP 175          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB6B_HUMAN (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 44/106 (41.51%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQER+ +L P Y R       VYDIT+ +SF +   W+ +++     D+++ LVGNK DL +KR++  ++G + A++  + FIETSAKT  N+ QLF  +A  LP
Sbjct:   70 AGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALP 175          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB6B_BOVIN (Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 44/106 (41.51%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQER+ +L P Y R       VYDIT+ +SF +   W+ +++     D+++ LVGNK DL +KR++  ++G + A++  + FIETSAKT  N+ QLF  +A  LP
Sbjct:   70 AGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALP 175          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AG ERY A+   YYRG      V+D+T   ++   + W+KEL  H    IV+ LVGNK+DL + REVP ++   +AE NG+ F+ETSA  + N+   FE + K +
Sbjct:   69 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 173          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB21_RAT (Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ AL P+YYR       VYD+T  DSF K + WVKEL+K    +I + +VGNK DL ++R V  Q+   YAE  G     TSAK    I +LF ++ KR+
Sbjct:   74 AGQERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 178          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB21_MOUSE (Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ AL P+YYR       VYD+T  DSF K + WVKEL+K    +I + +VGNK DL ++R V  Q+   YAE  G     TSAK    I +LF ++ KR+
Sbjct:   74 AGQERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 178          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB21_DICDI (Ras-related protein Rab-21 OS=Dictyostelium discoideum GN=rab21 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ AL P+YYRG      VYDIT  DSF KA+ W+KEL+     DI + ++GNK DL + R +P  D   YA+  G     TSAK    I +LF ++ +R+
Sbjct:   64 AGQERFHALGPIYYRGSQGALVVYDITDNDSFIKAKNWIKELKTMLGNDISLCIIGNKCDLEKTRVIPLADAEAYAKSVGAIHYSTSAKLNKGIEELFLDLTRRM 168          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 40/105 (38.10%), Postives = 69/105 (65.71%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE + ++   YYRG      VYDIT  ++FN    W+++ ++H +P++ + L+GNK DL  +R V  ++G ++A+++G+ F+ETSA+TA N+ + F   AK +
Sbjct:   63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEI 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 40/105 (38.10%), Postives = 69/105 (65.71%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQE + ++   YYRG      VYDIT  ++FN    W+++ ++H +P++ + L+GNK DL  +R V  ++G ++A+++G+ F+ETSA+TA N+ + F   AK +
Sbjct:   63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEI 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: YPT53_YEAST (GTP-binding protein YPT53 OS=Saccharomyces cerevisiae GN=YPT53 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = -1
Query:  185 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADL------HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 502
            AGQER+A LAP+YYR       V+D+T+  SF KAQ WV+EL +    DIV+ALVGNK DL      +E R + A       E+  + + E SAKT +NI Q+F+ + +++P
Sbjct:   69 AGQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHEKVGHDIVIALVGNKMDLLNNDDENENRAMKAPAVQNLCERENLLYFEASAKTGENIYQIFQTLGEKVP 180          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RAB6B_MOUSE7.215e-1941.51Ras-related protein Rab-6B OS=Mus musculus GN=Rab6... [more]
RAB6B_HUMAN7.215e-1941.51Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6... [more]
RAB6B_BOVIN7.215e-1941.51Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B ... [more]
RAB25_BOVIN7.215e-1941.90Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
RAB21_RAT7.215e-1945.71Ras-related protein Rab-21 OS=Rattus norvegicus GN... [more]
RAB21_MOUSE7.215e-1945.71Ras-related protein Rab-21 OS=Mus musculus GN=Rab2... [more]
RAB21_DICDI7.215e-1944.76Ras-related protein Rab-21 OS=Dictyostelium discoi... [more]
YPTV4_VOLCA9.423e-1938.10GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE9.423e-1938.10GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
YPT53_YEAST9.423e-1943.75GTP-binding protein YPT53 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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