DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 44/107 (41.12%), Postives = 64/107 (59.81%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYD+T   +F   + W+KEL+ H  P+IV+ LVGNK+DL     V   +G  +AE+  ++F+ETSA  + N+   F E+  ++ R
Sbjct:   71 AGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYR 177          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+  L P YYRG      VYD+T  D+F K + W+ EL+ + +  D+V  LVGNK D  + REV   +G+++A K+ M FIE SAKT D +   FEE+ +++
Sbjct:   65 AGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLENWLNELETYCTRNDLVKMLVGNKID-KDNREVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKI 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = -1
Query:  200 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 502
            AGQERY A+   YYRG      VYDIT   +F+  Q W++EL+ H   +IV+ + GNK+DL+  R V   DG   +EK G+ F+ETSA  A NI + F+ I
Sbjct:   69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTI 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKN + FIETSA  + N+ + F+ I   + R
Sbjct:   68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 174          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKN + FIETSA  + N+ + F+ I   + R
Sbjct:   68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 174          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKN + FIETSA  + N+ + F+ I   + R
Sbjct:   68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 174          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKN + FIETSA  + N+ + F+ I   + R
Sbjct:   68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 174          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA    N+   F+ I   + R
Sbjct:   68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYR 174          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AG ERY A+   YYRG      V+D+T   ++   + W+KEL  H    IV+ LVGNK+DL + REVP ++   +AE NG+ F+ETSA  + N+   FE + K +
Sbjct:   69 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 173          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AG ERY A+   YYRG      V+D+T   ++   + W+KEL  H    IV+ LVGNK+DL + REVP ++   +AE NG+ F+ETSA  + N+   FE + K +
Sbjct:   69 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 173          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RIC2_ORYSJ9.423e-1941.12Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB18B_DANRE9.423e-1944.34Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
RB11C_LOTJA9.423e-1945.54Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11B_RAT9.423e-1942.99Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE9.423e-1942.99Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN9.423e-1942.99Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN9.423e-1942.99Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11A_BOVIN9.423e-1943.93Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAB25_RABIT9.423e-1941.90Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RAB25_HUMAN9.423e-1941.90Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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