DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+  L P YYRG      VYD+T  D+F K   W+ EL+ + +  DIV  LVGNK D  E REV   +G+++A K+ M FIE SAKT D +   FEE+ +++
Sbjct:   65 AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVKMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 43/105 (40.95%), Postives = 67/105 (63.81%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ A+   YYRG      VYDIT   ++N    W+ + +   +P+ V+ L+GNKADL  +R+V  ++  ++AE+NG+ F+E SAKT +N+   F E AK++
Sbjct:   68 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 43/105 (40.95%), Postives = 67/105 (63.81%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ A+   YYRG      VYDIT   ++N    W+ + +   +P+ V+ L+GNKADL  +R+V  ++  ++AE+NG+ F+E SAKT +N+   F E AK++
Sbjct:   68 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 43/105 (40.95%), Postives = 67/105 (63.81%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ A+   YYRG      VYDIT   ++N    W+ + +   +P+ V+ L+GNKADL  +R+V  ++  ++AE+NG+ F+E SAKT +N+   F E AK++
Sbjct:   68 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 43/105 (40.95%), Postives = 67/105 (63.81%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ A+   YYRG      VYDIT   ++N    W+ + +   +P+ V+ L+GNKADL  +R+V  ++  ++AE+NG+ F+E SAKT +N+   F E AK++
Sbjct:   68 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 43/105 (40.95%), Postives = 67/105 (63.81%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ A+   YYRG      VYDIT   ++N    W+ + +   +P+ V+ L+GNKADL  +R+V  ++  ++AE+NG+ F+E SAKT +N+   F E AK++
Sbjct:   68 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 43/105 (40.95%), Postives = 67/105 (63.81%), Query Frame = -1
Query:  188 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 502
            AGQER+ A+   YYRG      VYDIT   ++N    W+ + +   +P+ V+ L+GNKADL  +R+V  ++  ++AE+NG+ F+E SAKT +N+   F E AK++
Sbjct:   68 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = -1
Query:  200 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 502
            AGQERY A+   YYRG      VYDIT   +F+    W++EL+ H   +IV+ + GNK+DL+  R V  +DG   AEK G+ F+ETSA  A N+ + F+ I
Sbjct:   69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTI 169          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = -1
Query:  200 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 502
            AGQER+ A+   YYRG      VYDITS  SF     W+ EL++    DI++ +VGNK+DL   REVP ++   +AE N + F+ETSA  + N+NQ FE +
Sbjct:   67 AGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERL 167          
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY A+   YYRG      VYDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKN + FIETSA  + N+ + F+ I   + R
Sbjct:   68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 174          
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RAB18_CHICK9.423e-1946.23Ras-related protein Rab-18 OS=Gallus gallus GN=RAB... [more]
RAB14_RAT9.423e-1940.95Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB9.423e-1940.95Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG9.423e-1940.95Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE9.423e-1940.95Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN9.423e-1940.95Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK9.423e-1940.95Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RAA2C_ARATH9.423e-1944.55Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11C_DICDI1.231e-1845.54Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RB11B_DISOM1.231e-1842.99Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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