CN184570

Overview
NameCN184570
Unique NameCN184570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:308..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.871e-40
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = -1
Query:  263 EINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 544
            E+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   86 EVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.871e-40
Identity = 69/95 (72.63%), Postives = 86/95 (90.53%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:   78 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 8.974e-40
Identity = 71/94 (75.53%), Postives = 80/94 (85.11%), Query Frame = -1
Query:  263 EINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 544
            E+ YL+RSGWIPCLEFELE G VYREH + PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P  + RIIGFDN RQVQCISF+A KPPG
Sbjct:   88 EVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 8.974e-40
Identity = 71/95 (74.74%), Postives = 85/95 (89.47%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            K+++YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG
Sbjct:   74 KQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.172e-39
Identity = 68/95 (71.58%), Postives = 85/95 (89.47%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            KE++YL+R+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQC+SFIA+KP G
Sbjct:   78 KEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.172e-39
Identity = 69/95 (72.63%), Postives = 81/95 (85.26%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            KE+ YL+++GW+PCLEFE E G+VYREH+ SPGYYDGRYWTMWKLPM+GCTD TQVL EV E +  YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   86 KEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.531e-39
Identity = 70/95 (73.68%), Postives = 81/95 (85.26%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            KE+ YL+R GW+PCLEFELE G VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E+ K YP  + RIIGFDN RQVQCISF+A KP G
Sbjct:   87 KEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.531e-39
Identity = 70/95 (73.68%), Postives = 85/95 (89.47%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            K+++YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG
Sbjct:   13 KQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.531e-39
Identity = 70/95 (73.68%), Postives = 85/95 (89.47%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            K+++YLIRS W+PCLEF  + G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG
Sbjct:   75 KQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.999e-39
Identity = 68/93 (73.12%), Postives = 85/93 (91.40%), Query Frame = -1
Query:  269 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 547
            KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP
Sbjct:   78 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
The following BLAST results are available for this feature:
BLAST of CN184570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RBS1_NICSY6.871e-4074.47Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_FLAPR6.871e-4072.63Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_MANES8.974e-4075.53Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HORVU8.974e-4074.74Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FLATR1.172e-3971.58Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS0_SOLTU1.172e-3972.63Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS_HEVBR1.531e-3973.68Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT1.531e-3973.68Ribulose bisphosphate carboxylase small chain clon... [more]
RBS2_WHEAT1.531e-3973.68Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS6_FLAPR1.999e-3973.12Ribulose bisphosphate carboxylase small chain 6, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184570 ID=CN184570; Name=CN184570; organism=Citrus sinensis; type=EST; length=547bp
ACTCATTAAACTGAACATCCGAGACCCAGATTAATGAAACTGAAAACAAA
GGATTCAATTATTAAAATATATATAAAAAAAAAAAAAGAAGCCAAAGTCG
GGGAGAAAACCAAAAAAGTTTGAGCAGCAGCAACAGCAGCCTAAGTACAA
ATTAAACGCAAACCGAACCCCCATTGATCGAATGATCATTATGGGGGTTA
CACATAATAATAATCAACAATATTGCATGGGTGGTTACACAAATTTAATT
GGGAACCTAGACGCCTGGTGGCTTGGCAGCAATGAAACTGATGCACTGCA
CTTGACGCTTGTTGTCAAATCCGATAATTCGGACGAATGAATGTGGGTAT
TCCTTCTGGACCTCCCCAACCTCCTTCAAAACCTGGGTTGCATCTGTGCA
CCCATACATGGGCAGCTTCCACATTGTCCAGTAGCGTCCATCGTAGTATC
CTGGTGACTTGTGGTGCTCACGGTACACCCATCCTTTCTCCAACTCGAAT
TCCAAGCAGGGAATCCAGCCGGAGCGGATAAGGTAATTGATTTCCTT
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