CN184570

Overview
NameCN184570
Unique NameCN184570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:308..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 1.999e-39
Identity = 70/95 (73.68%), Postives = 85/95 (89.47%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            K+++YLIRS W+PCLEF  + G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG
Sbjct:   74 KQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.410e-39
Identity = 67/95 (70.53%), Postives = 84/95 (88.42%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            KE++YL+R  W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI FIA++P G
Sbjct:   83 KEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.410e-39
Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = -1
Query:  266 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 547
            K+I YLI  GWIPCLEFELE  +VYRE+++SPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RIIGFDNKRQVQCISFIA KPP
Sbjct:   87 KQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.817e-39
Identity = 64/93 (68.82%), Postives = 85/93 (91.40%), Query Frame = -1
Query:  269 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 547
            KE +YL+R+GW+PC+EF++  G+VYRE+H+SPG+YDGRYWTMWKLPM+GCTD++QV++E+ E +KEYP +F+R+IGFDN RQVQCISFIA KP
Sbjct:   87 KECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.597e-39
Identity = 65/95 (68.42%), Postives = 82/95 (86.32%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            ++++YL+ + W+PCLEFE + G+VYREHH SPGYYDGRYWTMWKLPM+GCTD  QVL E+ E +KEYP++F+RIIGFD+ RQVQC+SFIA KP G
Sbjct:   85 RQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAG 179          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.597e-39
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = -1
Query:  263 EINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 544
            ++ YL+  GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KP G
Sbjct:   88 QVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAG 181          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 9.922e-39
Identity = 72/95 (75.79%), Postives = 83/95 (87.37%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            K+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:   75 KQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 9.922e-39
Identity = 72/95 (75.79%), Postives = 83/95 (87.37%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            K+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:   75 KQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 9.922e-39
Identity = 72/95 (75.79%), Postives = 83/95 (87.37%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            K+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:   75 KQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.210e-38
Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = -1
Query:  269 EINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 544
            EI YL+++GW+PCLEFE E G+VYREH  SPGYYDGRYWTMWKLPM+GCTDATQV  EV E +K YP + +RIIGFDN RQVQCISFIA KP
Sbjct:   86 EIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177          
The following BLAST results are available for this feature:
BLAST of CN184570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RBS1_WHEAT1.999e-3973.68Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS_HELAN3.410e-3970.53Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR3.410e-3976.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CUCSA5.817e-3968.82Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_SPIOL7.597e-3968.42Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_AMAHP7.597e-3972.34Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2_ORYSJ9.922e-3975.79Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS1_ORYSJ9.922e-3975.79Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI9.922e-3975.79Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_STELP2.210e-3875.00Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184570 ID=CN184570; Name=CN184570; organism=Citrus sinensis; type=EST; length=547bp
ACTCATTAAACTGAACATCCGAGACCCAGATTAATGAAACTGAAAACAAA
GGATTCAATTATTAAAATATATATAAAAAAAAAAAAAGAAGCCAAAGTCG
GGGAGAAAACCAAAAAAGTTTGAGCAGCAGCAACAGCAGCCTAAGTACAA
ATTAAACGCAAACCGAACCCCCATTGATCGAATGATCATTATGGGGGTTA
CACATAATAATAATCAACAATATTGCATGGGTGGTTACACAAATTTAATT
GGGAACCTAGACGCCTGGTGGCTTGGCAGCAATGAAACTGATGCACTGCA
CTTGACGCTTGTTGTCAAATCCGATAATTCGGACGAATGAATGTGGGTAT
TCCTTCTGGACCTCCCCAACCTCCTTCAAAACCTGGGTTGCATCTGTGCA
CCCATACATGGGCAGCTTCCACATTGTCCAGTAGCGTCCATCGTAGTATC
CTGGTGACTTGTGGTGCTCACGGTACACCCATCCTTTCTCCAACTCGAAT
TCCAAGCAGGGAATCCAGCCGGAGCGGATAAGGTAATTGATTTCCTT
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