DC887397

Overview
NameDC887397
Unique NameDC887397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887397 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.657e-31
Identity = 63/170 (37.06%), Postives = 105/170 (61.76%), Query Frame = -1
Query:  349 KGQGVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKD---YDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIRMD 849
            +G  + GAS+II +D+N  +     +FG T+FVNPK+    D+ + + + +MT+GG+D + +CTG+ + M  A E  H GWG ++++GV    +   T P  L+  R  KG+ FG  K RS++  +++ Y    L+VE+FITH  PF EIN+AF+ +  G+ +R +++ D
Sbjct:  214 QGAKLRGASKIIAIDINNKKKQYCSQFGATDFVNPKEDLAKDQTIVEKLIEMTDGGLDFTFDCTGNTKIMRDALEACHKGWGQSIIIGVAAAGEEISTRPFQLVTGRVWKGSAFGGIKGRSEMGGLIKDYQKGALKVEEFITHRRPFKEINQAFEDLHNGDCLRTVLKSD 383          
BLAST of DC887397 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.657e-31
Identity = 69/168 (41.07%), Postives = 100/168 (59.52%), Query Frame = -1
Query:  349 KGQGVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDY-DKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIRMD 849
            +G  + GA++IIG+D N  +F   KKFG T+F+NP    +K + +VI +MT GGVD S EC G    +  AF     G G  V++G+            +LL  R + G+ FG  K + D+P +V+ Y+ KEL ++ FITH + F EINKAF L+  G+S+RCI+ MD
Sbjct:  220 EGARLRGAAKIIGIDTNSDKFELGKKFGFTDFINPTLCGEKKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHAAPISLGSFDLLRGRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINKAFALLEEGKSLRCILWMD 387          
BLAST of DC887397 vs. ExPASy Swiss-Prot
Match: ADH8_RANPE (NADP-dependent alcohol dehydrogenase OS=Rana perezi GN=ADH8 PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 3.471e-31
Identity = 65/163 (39.88%), Postives = 107/163 (65.64%), Query Frame = -1
Query:  358 GQGVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 846
            G   +GASRIIGV  +  +F +A + G TE +NPKDYDKP+ +VI + TNGGVD +VEC G ++ M++A +  + G GV V++G+ + ++     P+ LL  R+LKG+ FG +K   ++  +V+ YM K++ V   ++  +   +INKAF+L+ +G+ +R I+
Sbjct:  210 GCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFK-GEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQGVRSIM 371          
BLAST of DC887397 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.471e-31
Identity = 63/159 (39.62%), Postives = 100/159 (62.89%), Query Frame = -1
Query:  358 SGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 834
            +GASRIIG+DLN  +F +A   G TE ++PKD  KP+ +V+++MT   V  + E  G ++ MI A    H  +G +V+VGVP         PM L   RT KG  FG  K R D+P +V +++ K+ ++++ ITH +PF +I++ F+L+ +G+SIR ++
Sbjct:  214 AGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISEGFELLNSGQSIRTVL 372          
BLAST of DC887397 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.319e-30
Identity = 64/163 (39.26%), Postives = 102/163 (62.58%), Query Frame = -1
Query:  358 GQGVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 846
            G   +GA+RIIGVD+N  +F +A++ G TE +NP+D  KP+Q+V+ DMT+ G+D   E  G++  + +A    ++ +GV V+VG+       K       + R+LKG+ FG +K R  +P +V  YM K+L ++  ITHT+   +IN+A +LM  G+ IRCI+
Sbjct:  211 GCKAAGATRIIGVDVNKEKFKKARELGATECLNPQDLKKPIQEVLFDMTDAGIDFCFEAIGNLDVLAAALASCNESYGVCVVVGLLPASVQLKISGQLFFSGRSLKGSVFGGWKSRQHIPKLVADYMAKKLNLDPLITHTLNLDKINEAVELMKTGKCIRCIL 373          
BLAST of DC887397 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.545e-30
Identity = 68/166 (40.96%), Postives = 98/166 (59.04%), Query Frame = -1
Query:  358 KGQGVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQV--IADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 849
            +G    GA++II VD++  +    +K G T FVNP    +    V  + +MT+GG D + +CTG+V  M +A E  H GWG +V++GV        T P  L+  RT KG  FG  K RS LP +V  Y++ +L+VE+FITH  P + INKAF+ M AG+ IR ++
Sbjct:  213 QGCAERGAAQIILVDISDKKEEWGQKLGATAFVNPTKLPEGTTIVDKLIEMTDGGCDFTFDCTGNVGVMRNALEACHKGWGTSVIIGVAAAGKEISTRPFQLVTGRTWKGAAFGGVKGRSQLPGIVNNYLDGKLKVEEFITHREPLAAINKAFEEMHAGDCIRAVV 378          
BLAST of DC887397 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.248e-29
Identity = 67/168 (39.88%), Postives = 99/168 (58.93%), Query Frame = -1
Query:  352 KGQGVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQV--IADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIRM 849
            +G    GAS II +D+N S+   A +FG T+FVNP    +    V  + D+T+GG D + +CTG+VQ M +A E  H GWG ++++GV        T P  L+  R  +G  FG  K R+ +PS+V+ Y++ +++V++FITH      INKAF  M AG  IR +I M
Sbjct:  211 QGAVSKGASEIIVIDINDSKKAWADQFGATKFVNPTTLPEGTNIVDYLIDITDGGFDYTFDCTGNVQVMRNALESCHKGWGESIIIGVAAAGKEISTRPFQLVTGRVWRGCAFGGIKGRTQMPSLVQDYLDGKIKVDEFITHRHDLDNINKAFHDMHAGNCIRAVITM 378          
BLAST of DC887397 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.248e-29
Identity = 66/167 (39.52%), Postives = 99/167 (59.28%), Query Frame = -1
Query:  349 KGQGVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIRMD 849
            +G   +GASRII +D+N  +   AKKFG T+F++       VQ VI D+T+GGVD + +CTG+V  M    +  H GWG   ++GV          P  ++  R + G+ FG  K RS+LP+ V++YM    +V+++IT+  P   INKAFD M  G+ IRC++ M+
Sbjct:  211 QGAVAAGASRIIAIDINADKEVYAKKFGATDFIDSSKVKDLVQYVI-DVTDGGVDYAFDCTGNVTVMQQELQFCHKGWGKLCVIGVAAAGKTLDFRPFLVVTGRQVLGSAFGGVKGRSELPNFVDEYMQGHFKVDEYITNEEPLKNINKAFDHMHEGKCIRCVVDMN 376          
BLAST of DC887397 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.541e-29
Identity = 63/164 (38.41%), Postives = 100/164 (60.98%), Query Frame = -1
Query:  358 GQGVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVG-VPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 846
            G   +GA+RII VD+N  RF +AK  G T+ V+P+D++KP+++V++DM +GGVD   E TG+ +A+ +A    H   GV V VG + +             + R LKG+  G +K + ++P +V  YM K+  ++  ITHT+  SE N+A  LM +G+ IRC++
Sbjct:  211 GCKAAGAARIIAVDINKDRFAKAKTVGATDCVDPRDFEKPIEEVLSDMIDGGVDFCFEVTGNTEAVGAALGSCHKDHGVCVTVGALASFTSTLSIRSHLFFSGRILKGSILGGWKTKEEIPKLVSDYMAKKFNIDPLITHTLTLSEANEAVQLMKSGQCIRCVL 374          
BLAST of DC887397 vs. ExPASy Swiss-Prot
Match: ADH6_HUMAN (Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.045e-27
Identity = 60/157 (38.22%), Postives = 97/157 (61.78%), Query Frame = -1
Query:  376 GQGVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGE 846
            G   +GA+RIIGVD+N  +F +A++ G TE +NP+D  KP+Q+V+ DMT+ G+D   E  G++  + +A    ++ +GV V+VGV       K       + R+LKG+ FG +K R  +P +V  YM ++L ++  ITHT+   +IN+A +LM  G+
Sbjct:  211 GCKAAGAARIIGVDVNKEKFKKAQELGATECLNPQDLKKPIQEVLFDMTDAGIDFCFEAIGNLDVLAAALASCNESYGVCVVVGVLPASVQLKISGQLFFSGRSLKGSVFGGWKSRQHIPKLVADYMAEKLNLDPLITHTLNLDKINEAVELMKTGK 367          
The following BLAST results are available for this feature:
BLAST of DC887397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FADH_YEAST2.657e-3137.06S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADHL1_ARATH2.657e-3141.07Alcohol dehydrogenase-like 1 OS=Arabidopsis thalia... [more]
ADH8_RANPE3.471e-3139.88NADP-dependent alcohol dehydrogenase OS=Rana perez... [more]
ADH7_HUMAN3.471e-3139.62Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
ADH6_PONAB1.319e-3039.26Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
FADH_CANMA6.545e-3040.96S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]
FADH_PICPA3.248e-2939.88S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
FADH1_SCHPO3.248e-2939.52Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADH6_RAT5.541e-2938.41Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
ADH6_HUMAN1.045e-2738.22Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE... [more]

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Properties
Property NameValue
Genbank descriptionDC887397 EIC Citrus sinensis cDNA clone EIC0315 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887397 ID=DC887397; Name=DC887397; organism=Citrus sinensis; type=EST; length=849bp
GACTGGCGTAATTACCATATCATTAACACTGCAACGGCGTATAAGAAAGA
AGATTTACACGAAAATCTTTATTACATAAGCTACAAAAAGAAGTACTGTA
AGAAATAGGTAGAAAACACACCTCTTTGTACGCCATATGCAGCAAGTCAT
CAAACAGAAAAACAAAACAAAAAAAGGGACTGTAAGAAATATGTAGAAAA
CACAACTCTTTGAAAGCCATTCGCAGCAAGTCATCAAACATACAGCATAA
ATTACTTATTCTCGGGGTAATATATAACTTGGAAAATTATGTGATCATCT
TCATTCTGCCTCCATTAGATTGATCAGCAACAGCAGACACATCTAACCAT
CCATGCGAATGATGCACCTAATGCTTTCTCCCGCAAGCATGAGGTCAAAT
GCCTTGTTTATCTCCGAGAAGGGCACAGTGTGAGTGATGAATTTTTCGAC
CTCCAACTCCTTGTTCATGTATTTTTCAACAACAGAAGGAAGATCAGAGC
GAGGTTTGTAGTTGCCAAAGAAGGTACCCTTAAGAGTCCTCTCATTAAGC
AGATTCATGGGATGAGTCTTGAATGCATCATCTTTGTTTGGCACACCCAC
AAGCACAGCAACACCCCAACCATCGTGAACGCATTCAAATGCTGAAATCA
TGGCCTGGACGCTTCCAGTACATTCAACACTTCTATCCACTCCACCATTG
GTCATGTCAGCAATCACCTGTTGAACAGGTTTGTCATAATCTTTTGGATT
CACAAACTCGGTAACCCCAAACTTCTTGGCTTCATTGAATCTGCTTGGGT
TCAAATCAACACCAATGATCCTGGAAGCCCCTGATACCCCTTGCCCCTT
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