CN184558

Overview
NameCN184558
Unique NameCN184558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig395 contig Csv1_Contig395:332..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL23_METM6 (50S ribosomal protein L23P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl23p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.792e-13
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = -3
Query:  178 LDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 432
            +D + ++K P+ +E  MK IE+ N LVF V+ +A K  I  A+K++++ +   +NT I P G KKAY+ L  +Y+A +VA  +GI
Sbjct:    1 MDAFDVIKTPIVSEKTMKLIEEENRLVFYVERKATKADISAAIKELFDAEVADINTSITPKGKKKAYITLKAEYNAGEVAASLGI 85          
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL23_HALSA (50S ribosomal protein L23P OS=Halobacterium salinarium GN=rpl23p PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.792e-13
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -3
Query:  178 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 417
            I+ YPL TE AM +++  N L FIVDI A K +I+D V+  Y++    VNT I P+  KKA V+L+ + DA DVA++IG+
Sbjct:    4 IIDYPLVTEKAMDEMDFQNKLQFIVDIDAAKPEIRDVVESEYDVTVVDVNTQITPEAEKKATVKLSAEDDAQDVASRIGV 83          
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL23_ARCFU (50S ribosomal protein L23P OS=Archaeoglobus fulgidus GN=rpl23p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.057e-13
Identity = 34/80 (42.50%), Postives = 56/80 (70.00%), Query Frame = -3
Query:  178 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 417
            ++K  L TE ++ ++E  N L  IVD+RA K  IK  ++K++ ++ ++VNTLI P G KKAY++L PDY A ++ +K+G+
Sbjct:    4 LIKCFLVTEKSVAELE-KNVLTAIVDMRARKEHIKKEIEKLFNVEVERVNTLITPKGEKKAYIKLKPDYSAEEILSKLGV 82          
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL23_HALMA (50S ribosomal protein L23P OS=Haloarcula marismortui GN=rpl23p PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.992e-13
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = -3
Query:  178 YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 423
            + ++K+P  TE AM  ++  N L F VD RA K ++ DAV++ Y++  ++VNT    DG KKA VRL+ D DA +VA++IG+
Sbjct:    3 WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASRIGV 84          
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL23_HALWD (50S ribosomal protein L23P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl23p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.284e-11
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = -3
Query:  178 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 417
            +++YPL TE AM +++ +N L FIVD  A K +I++ ++  YEI      T I P   KKA VRL+ D DA D+A++IG+
Sbjct:    4 LIEYPLVTEKAMDEMDFDNKLQFIVDTDATKDEIENEIESRYEITIIDTKTQITPRAKKKATVRLSDDDDAQDIASRIGV 83          
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL23_METTH (50S ribosomal protein L23P OS=Methanobacterium thermoautotrophicum GN=rpl23p PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.191e-11
Identity = 28/85 (32.94%), Postives = 55/85 (64.71%), Query Frame = -3
Query:  178 LDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 432
            +D Y ++  P  TE +M  I+ NN L F+V  ++ K+ ++ A ++++ ++ ++VNT + P G K AY++L  ++ A D+A K+G+
Sbjct:    1 MDPYAVIMKPHVTEKSMNLIDQNNELAFVVMRKSTKKDVRRAFEELFAVKVERVNTQVTPRGQKIAYIKLAKEHSAEDIAVKLGV 85          
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL23_NATPD (50S ribosomal protein L23P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl23p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.325e-11
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = -3
Query:  178 LKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 414
            +K+PL TE AM  ++  N L F+    A K  I  AV+  ++++   +NT +R DG KKA V L+ D DA +VA++IG+
Sbjct:    3 IKHPLVTEKAMNDMDFENKLQFVCHPEATKGDIAAAVESQFDVEVDSINTQVRMDGDKKAIVELSADDDAQEVASRIGV 81          
The following BLAST results are available for this feature:
BLAST of CN184558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RL23_METM61.792e-1340.0050S ribosomal protein L23P OS=Methanococcus maripa... [more]
RL23_HALSA1.792e-1347.5050S ribosomal protein L23P OS=Halobacterium salina... [more]
RL23_ARCFU3.057e-1342.5050S ribosomal protein L23P OS=Archaeoglobus fulgid... [more]
RL23_HALMA3.992e-1343.9050S ribosomal protein L23P OS=Haloarcula marismort... [more]
RL23_HALWD1.284e-1143.7550S ribosomal protein L23P OS=Haloquadratum walsby... [more]
RL23_METTH2.191e-1132.9450S ribosomal protein L23P OS=Methanobacterium the... [more]
RL23_NATPD8.325e-1140.5150S ribosomal protein L23P OS=Natronomonas pharaon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L06_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184558 ID=CN184558; Name=CN184558; organism=Citrus sinensis; type=EST; length=482bp
ATTTTGATTTAATGAGATGCAGTTAATGGCAGAACAAGTTTAACGATGAT
CTTAATAGGCATCCAATGCAAAAACTCAATATAAAAGATAGATCTGAGTA
CATATTTGAAAATAACCAAAACGAAATTGGAGTCCTAACAAAACTGTTGA
CAATACACACGAACTCACTCCTTAGATAATTCCAATCTTGTTGGCCACAT
CCAATGCATCATAATCCGGAGTCAGCCTAACATATGCCTTCTTAGTTCCA
TCAGGTCTGATCAAAGTGTTGACTTTCTTGGTCTGAATTTCGTACATTTT
CTTGACGGCATCCTTGATCTTCCTCTTATCAGCACGGATGTCAACAATGA
AAACCAAGGTATTATTGTCCTCGATCTTCTTCATAGCTGATTCGGTAGTC
AAGGGATACTTGAGAATTTGGTACTGGTCCAACTTTGTTCCTCGGTGGGA
GCACTAAATGCGGGGATACCTTTGGGGGGGTT
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