EY666424

Overview
NameEY666424
Unique NameEY666424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDA1A_XENLA (Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-A PE=1 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 3.068e-98
Identity = 165/228 (72.37%), Postives = 194/228 (85.09%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            +H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ  AGGSV  AVKLN    DI++NW+GGLHHAKK EASGFCYVNDIVLAILELLK H+RV+Y+DIDIHHGDGVEEAFYTTDRVMTVSFHK+G+YFPGTGD+RDIG  KGK+Y++N  L DGIDDESY  +FKP++ KVME+F+P AV LQCGADSLSGDRL  F  +IKGHAK V+FIK F++P
Sbjct:   67 YHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYALRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLP 294          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDAC2_MOUSE (Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 5.234e-98
Identity = 164/228 (71.93%), Postives = 193/228 (84.65%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            +H+D+Y+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV GAVKLN    D+A+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK+G+YFPGTGD+RDIG  KGK+Y++N P+ DGIDDESY  +FKPII KVME+++P AV LQCGADSLSGDRL  F  ++KGHAK V+  K F++P
Sbjct:   68 YHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVAKTFNLP 295          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDA1B_XENLA (Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 5.234e-98
Identity = 164/228 (71.93%), Postives = 194/228 (85.09%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            +H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DI++NW+GGLHHAKK EASGFCYVNDIVLAILELLK H+RV+Y+DIDIHHGDGVEEAFYTTDRVM+VSFHK+G+YFPGTGD+RDIG  KGK+Y++N PL DGIDDESY  +FKP++ KVME+F+P AV LQCGADSLSGDRL  F  +IKGHAK V+FIK F++P
Sbjct:   67 YHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGVEEAFYTTDRVMSVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMTKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLP 294          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDA11_DICDI (Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 9.871e-97
Identity = 159/228 (69.74%), Postives = 194/228 (85.09%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            FH+DDY++FL+ +TP+   D  +QL +FNV EDCPVFDG+++FCQ  +GGS+G AVK+N    D+AINWAGGLHHAKK EASGFCY NDIVL+ILELLK HERVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK+GDYFPGTGD++DIG  KGK+YSLN PL DGIDDESY  +F+PII  VM+ +RPGAV +QCGADSL+GDRL  F  +++GHA+ ++F+K F+VP
Sbjct:   62 FHSDDYINFLKLVTPDNMHDYSKQLVKFNVREDCPVFDGMYNFCQISSGGSIGCAVKVNSKESDVAINWAGGLHHAKKSEASGFCYTNDIVLSILELLKHHERVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGDYFPGTGDVKDIGADKGKYYSLNFPLKDGIDDESYQSIFRPIIRSVMDFYRPGAVVIQCGADSLTGDRLGCFNLTLRGHAQCIEFLKSFNVP 289          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDAC1_DROME (Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 3.175e-95
Identity = 158/228 (69.30%), Postives = 190/228 (83.33%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            FH+D+YV FLRSI P+   +  +Q++RFNVGEDCPVFDGL+ FCQ  AGGSV  AVKLN    +I INW GGLHHAKK EASGFCYVNDIVL ILELLK H+RVLY+DID+HHGDGVEEAFYTTDRVMTVSFHK+G+YFPGTGD+RDIG  KGK+Y++N+PL DG+DD++Y  +F PII KVME F+P AV LQCGADSL+GDRL  F  ++KGH K V+F+K +++P
Sbjct:   65 FHSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPIISKVMETFQPAAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFVKKYNLP 292          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 7.074e-95
Identity = 163/230 (70.87%), Postives = 192/230 (83.48%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQ--LRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            FH+ +YV FL S++PE+  D    R L+RFNVGEDCPVFDGLF FC+  AGGS+G AVKLN    DIAINW GGLHHAKK EASGFCYVNDIVL ILELLK  +RVLY+DID+HHGDGVEEAFYTTDRVMTVSFHKFGD+FPGTG IRD+G  KGK+Y+LNVPL+DG+DDES+  LF+P+I KVMEV++P AV LQCGADSLSGDRL  F  S+KGHA  ++F++ ++VP
Sbjct:   77 FHSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNVPLNDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVP 306          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDAC2_CHICK (Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 5.070e-93
Identity = 159/228 (69.74%), Postives = 188/228 (82.46%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            +H+D+Y+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV GAVKLN    D+A+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVS     + FPGTGD+RDIG  KGK+Y++N P+ DGIDDESY  +FKPII KVME+++P AV LQCGADSLSGDRL  F  ++KGHAK V+ +K F++P
Sbjct:   68 YHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSEVSMVNNFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLP 295          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDA9_ARATH (Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 9.561e-92
Identity = 154/229 (67.25%), Postives = 190/229 (82.97%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGD-YFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            FH+ DYV FL+ I PE Q     ++ R+N+GEDCPVF+ LF FCQ YAGG++  A +LN+ LCDIAINWAGGLHHAKKC+ASGFCY+ND+VL ILELLK H RVLY+DID+HHGDGVEEAFY TDRVMTVSFHKFGD +FPGTGD+++IG  +GKFY++NVPL DGIDD S++ LF+ II KV+E+++PGA+ LQCGADSL+ DRL  F  SI GHA+ VKF+K F++P
Sbjct:   63 FHSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRLNNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFRTIISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNLP 291          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDA1_CAEEL (Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 5.800e-89
Identity = 152/228 (66.67%), Postives = 183/228 (80.26%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            FH+D+Y++FL+S  P+  +   +Q+ +FNVGEDCP+FDGL+ FCQ  +GGS+  A KLN    DIAINW GGLHHAKK EASGFCY NDIVL ILELLK H+RVLYVDID+HHGDGVEEAFYTTDRVMTVSFHK+GD+FPGTGD++DIG  KGK YS+NVPL DGI D SY  +FKPI+ KVME F P AV LQCGADSL+GDRL  F  ++KGH +  +F + ++VP
Sbjct:   71 FHSDEYMTFLKSANPDNLKSFNKQMLKFNVGEDCPLFDGLYEFCQLSSGGSLAAATKLNKQKVDIAINWMGGLHHAKKSEASGFCYTNDIVLGILELLKYHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGDLKDIGAGKGKLYSVNVPLRDGITDVSYQSIFKPIMTKVMERFDPCAVVLQCGADSLNGDRLGPFNLTLKGHGECARFFRSYNVP 298          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDA12_DICDI (Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 6.413e-88
Identity = 151/229 (65.94%), Postives = 187/229 (81.66%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            FH++DYV FL  +TPE   ++ + +KRF++GEDCPVF GL+ +C  Y+GGS+ GA+KLNH + DIAINW+GGLHHA+K EASGFCYVNDIVLAILELLK H RVLY+DID+HHGDGV+EAFY TDRVMTVSFHKF GD+FPGTGDI +IG   GK YS+NVPL DGIDD++Y  +FKP+I  VM+ +RP  + LQCGADSL  DRL  F  +IKGHA+ V+F+K F++P
Sbjct:   71 FHSEDYVDFLERVTPENI-NEWKDVKRFHIGEDCPVFPGLYDYCSIYSGGSIEGALKLNHRMYDIAINWSGGLHHARKDEASGFCYVNDIVLAILELLKFHARVLYIDIDVHHGDGVQEAFYLTDRVMTVSFHKFGGDFFPGTGDIDEIGAKTGKLYSVNVPLADGIDDKNYLNIFKPVIQGVMDYYRPSVIVLQCGADSLRFDRLGCFNLTIKGHAECVRFVKSFNIP 298          
The following BLAST results are available for this feature:
BLAST of EY666424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
HDA1A_XENLA3.068e-9872.37Probable histone deacetylase 1-A OS=Xenopus laevis... [more]
HDAC2_MOUSE5.234e-9871.93Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=... [more]
HDA1B_XENLA5.234e-9871.93Probable histone deacetylase 1-B OS=Xenopus laevis... [more]
HDA11_DICDI9.871e-9769.74Type-1 histone deacetylase 1 OS=Dictyostelium disc... [more]
HDAC1_DROME3.175e-9569.30Histone deacetylase Rpd3 OS=Drosophila melanogaste... [more]
HDA6_ARATH7.074e-9570.87Histone deacetylase 6 OS=Arabidopsis thaliana GN=H... [more]
HDAC2_CHICK5.070e-9369.74Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE... [more]
HDA9_ARATH9.561e-9267.25Histone deacetylase 9 OS=Arabidopsis thaliana GN=H... [more]
HDA1_CAEEL5.800e-8966.67Histone deacetylase 1 OS=Caenorhabditis elegans GN... [more]
HDA12_DICDI6.413e-8865.94Histone deacetylase B OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666424 ID=EY666424; Name=EY666424; organism=Citrus sinensis; type=EST; length=812bp
CCACGCGTCCGTTCCATGCCGATGATTATGTCTCCTTCCTCAGGAGTATC
ACCCCTGAGACTCAGCAGGATCAGCTTAGGCAGCTCAAGCGCTTTAATGT
TGGTGAAGATTGCCCTGTCTTTGACGGTCTTTTCTCCTTCTGTCAAACTT
ATGCTGGGGGCTCTGTTGGTGGTGCTGTCAAGTTGAATCACGGCCTCTGT
GATATTGCTATCAATTGGGCCGGTGGCCTTCATCATGCTAAGAAATGTGA
AGCTTCCGGATTCTGTTATGTCAATGACATTGTCTTGGCCATTTTGGAGC
TACTTAAGCAGCATGAGCGTGTATTATATGTAGATATTGATATCCATCAT
GGAGATGGCGTGGAGGAAGCATTTTATACAACTGATAGGGTAATGACTGT
TTCATTCCATAAGTTCGGAGATTATTTTCCTGGTACAGGGGATATACGTG
ATATTGGTTATTCGAAAGGAAAGTTCTACTCCCTTAATGTTCCTCTTGAT
GATGGTATCGATGATGAGAGCTACCATTACTTGTTCAAACCGATAATCGG
AAAAGTGATGGAAGTTTTTAGACCTGGTGCTGTGGCCCTCCAATGTGGTG
CTGACTCATTGTCTGGGGATAGGTTAGAATCCTTCATCTTTTCAATTAAA
GGGCATGCAAAAGGGGTCAAATTTATTAAAATATTCCATGTGCCTCTGTT
GCTGCTGGGTGGGGGGGGGTAACCCTATTCGAATTGTTGCTCCCTGGTTG
GGGTCACAAAAAGGGAATTTGCCTTTGGAACAAAAAGTTGAAGAACAAAA
TCCCCAAGGATT
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