EY666424

Overview
NameEY666424
Unique NameEY666424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDAC3_XENLA (Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 2.281e-85
Identity = 143/229 (62.45%), Postives = 180/229 (78.60%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            FH++DY+ FL+ ++P   Q   + L  FNVG+DCPVF GLF FC  Y G S+ GA  LN+  CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+ ++G   G++Y LNVPL DGIDD+SY +LF+P+I +V++ ++P  + LQCGADSL  DRL  F  SI+GH + V+++K F++P
Sbjct:   61 FHSEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATLLNNKNCDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRHLFQPVIKQVIDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVQYVKSFNIP 289          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDA2_CAEEL (Putative histone deacetylase 2 OS=Caenorhabditis elegans GN=hda-2 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.026e-77
Identity = 139/231 (60.17%), Postives = 171/231 (74.03%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPE---TQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            FH +DYV+FL+++TP+   T  D +  L++FN+GEDCP+F GL+ +C  YAGGSV GA +LNH + DI INW GGLHHAKK EASGFCYVNDIVL ILELLK H+RVLY+DIDIHHGDGV+EAF  +DRVMTVSFH+FG YFPG+G I D G   GK++++NVPL   I DE Y  LF+ +I  V E F P A+ LQCG+DSL  DRL  F  S   HA+ VK++K    P
Sbjct:   87 FHTEDYVNFLQTVTPKLGLTMPDDV--LRQFNIGEDCPIFAGLWDYCTLYAGGSVEGARRLNHKMNDIVINWPGGLHHAKKSEASGFCYVNDIVLGILELLKYHKRVLYIDIDIHHGDGVQEAFNNSDRVMTVSFHRFGQYFPGSGSIMDKGVGPGKYFAINVPLMAAIRDEPYLKLFESVISGVEENFNPEAIVLQCGSDSLCEDRLGQFALSFNAHARAVKYVKSLGKP 315          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HOS2_YEAST (Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae GN=HOS2 PE=1 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.090e-74
Identity = 130/230 (56.52%), Postives = 169/230 (73.48%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLR-QLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            FH++DYV+FL  ++PE      R  L+ FN+G+DCP+F  L+ +   Y G S+    KL +   DIAINW+GGLHHAKK   SGFCYVNDIVL+IL LL+ H R+LY+DID+HHGDGV+EAFYTTDRV T+SFHK+ G++FPGTGD+ +IG  KGK ++LNVPL+DGIDD+SY  LFK I+  ++  F+P  +  QCGADSL  DRL  F  +IK H + VKF+K F +P
Sbjct:   84 FHSEDYVNFLSKVSPENANKLPRGTLENFNIGDDCPIFQNLYDYTTLYTGASLDATRKLINNQSDIAINWSGGLHHAKKNSPSGFCYVNDIVLSILNLLRYHPRILYIDIDLHHGDGVQEAFYTTDRVFTLSFHKYNGEFFPGTGDLTEIGCDKGKHFALNVPLEDGIDDDSYINLFKSIVDPLIMTFKPTLIVQQCGADSLGHDRLGCFNLNIKAHGECVKFVKSFGLP 313          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: PHD1_SCHPO (Histone deacetylase phd1 OS=Schizosaccharomyces pombe GN=phd1 PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.616e-73
Identity = 129/229 (56.33%), Postives = 168/229 (73.36%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            FH +DY+ FL+ +TP+  +    + ++FN+G+DCPVFDG + F Q  AG S+  + KL  G  DIAINW+GGLHHAK+ EASGFCYVNDIVLAIL +L+   RVLY+DIDIHHGDGV++AFY +DRV+TVSFHK+ GD+FP TG+  + G   GK+++LNVPL+DGI DE Y  LFK II   +  F+P A+ LQCGADSL  DRL  F  SI  H + V+F + F++P
Sbjct:   84 FHREDYLDFLKRVTPDNAEQFADKFQQFNIGDDCPVFDGTYEFSQRSAGASLDASRKLVQGQTDIAINWSGGLHHAKRGEASGFCYVNDIVLAILNMLRFFPRVLYIDIDIHHGDGVQQAFYESDRVLTVSFHKYNGDFFPATGNFDENGVKGGKYFALNVPLEDGIGDEQYTSLFKSIIEPTINTFQPSAIVLQCGADSLGYDRLGVFNLSIHAHGECVRFTRSFNIP 312          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDA7_ARATH (Histone deacetylase 7 OS=Arabidopsis thaliana GN=HDA7 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 6.030e-70
Identity = 134/234 (57.26%), Postives = 165/234 (70.51%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQ----LRQLKRFNVGEDC--PVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            FH+ +Y++FL+S+TPET  D        LKRFNV  D   PVF  LF +C+ YAGGS+  A KLN    DIAINWAGG+HH KK +ASGF YVND+VLAILELLK  +RVLY++I   HGD VEEAF  TDRVMTVSFHK GD    TGDI D G  KG++YSLN PL DG+DD S   LF P+I + ME++ P  + LQCGADSL+GD   +F  SIKGH   +++++ F+VP
Sbjct:   68 FHSLEYINFLKSVTPETVTDPHPSVSENLKRFNVDVDWDGPVFHNLFDYCRAYAGGSISAAAKLNRQEADIAINWAGGMHHVKKDKASGFGYVNDVVLAILELLKSFKRVLYIEIGFPHGDEVEEAFKDTDRVMTVSFHKVGD----TGDISDYGEGKGQYYSLNAPLKDGLDDFSLRGLFIPVIHRAMEIYEPEVIVLQCGADSLAGDPFGTFNLSIKGHGDCLQYVRSFNVP 297          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDAC8_RAT (Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.657e-60
Identity = 106/223 (47.53%), Postives = 154/223 (69.06%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFI 677
            FH D Y+  L+ ++ E  +D    ++ + +G DCP  +G+F +     GG++  A  L  G C +AINW+GG HHAKK EASGFCY+ND VL IL L ++ +R+LYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ D+G  KG++YS+NVP+ DGI DE Y+++ + ++ +V + F P AV LQ GAD+++GD + SF  +  G  K +K++
Sbjct:   70 FHTDAYLQHLQKVSQEGDEDHPDSIE-YGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVNVPIQDGIQDEKYYHICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYV 291          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDAC8_MOUSE (Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 5.657e-60
Identity = 106/223 (47.53%), Postives = 154/223 (69.06%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFI 677
            FH D Y+  L+ ++ E  +D    ++ + +G DCP  +G+F +     GG++  A  L  G C +AINW+GG HHAKK EASGFCY+ND VL IL L ++ +R+LYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ D+G  KG++YS+NVP+ DGI DE Y+++ + ++ +V + F P AV LQ GAD+++GD + SF  +  G  K +K++
Sbjct:   70 FHTDAYLQHLQKVSQEGDEDHPDSIE-YGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVNVPIQDGIQDEKYYHICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYV 291          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDAC8_HUMAN (Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 7.389e-60
Identity = 107/223 (47.98%), Postives = 152/223 (68.16%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFI 677
            FH D Y+  L+ ++ E   D    ++ + +G DCP  +G+F +     G ++  A  L  G+C +AINW+GG HHAKK EASGFCY+ND VL IL L ++ ER+LYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ D+G  KG++YS+NVP+ DGI DE Y+ + + ++ +V + F P AV LQ GAD+++GD + SF  +  G  K +K+I
Sbjct:   70 FHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYI 291          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDAC8_XENTR (Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.789e-59
Identity = 109/229 (47.60%), Postives = 154/229 (67.25%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            FH D Y+  L  ++ E   D    L+ + +G DCP+ +G++ +     G ++  A +L  G   IAINW GG HHAKK EASGFCY+ND VL IL+L ++ +RVLYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ DIG  KG++YS+NVPL DGI DE Y+ + + ++ +V   F P AV LQ GAD+++GD + SF  + +G  K +K++  + +P
Sbjct:   62 FHTDSYLQHLHKVSEEGDNDDPETLE-YGLGYDCPITEGIYDYAAAVGGATLTAAEQLMAGKTRIAINWPGGWHHAKKDEASGFCYLNDAVLGILKLREKFDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLGKGRYYSVNVPLQDGIQDEKYYQICEGVLKEVFTTFNPEAVVLQLGADTIAGDPMCSFNMTPQGIGKCLKYVLQWQLP 289          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDAC8_XENLA (Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.393e-58
Identity = 107/229 (46.72%), Postives = 154/229 (67.25%), Query Frame = 3
Query:   12 FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIFHVP 695
            FH D Y+  L  ++ E   D    L+ + +G DCP+ +G++ +     G ++  A +L  G   IA+NW GG HHAKK EASGFCY+ND VL IL+L ++ +RVLYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ DIG  KG++YS+NVPL DGI D+ Y+ + + ++ +V   F P AV LQ GAD+++GD + SF  + +G  K +K++  + +P
Sbjct:   18 FHTDAYLQHLHKVSEEGDNDDPETLE-YGLGYDCPITEGIYDYAAAVGGATLTAAEQLIEGKTRIAVNWPGGWHHAKKDEASGFCYLNDAVLGILKLREKFDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLGKGRYYSINVPLQDGIQDDKYYQICEGVLKEVFTTFNPEAVVLQLGADTIAGDPMCSFNMTPEGIGKCLKYVLQWQLP 245          
The following BLAST results are available for this feature:
BLAST of EY666424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
HDAC3_XENLA2.281e-8562.45Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 P... [more]
HDA2_CAEEL1.026e-7760.17Putative histone deacetylase 2 OS=Caenorhabditis e... [more]
HOS2_YEAST3.090e-7456.52Probable histone deacetylase HOS2 OS=Saccharomyces... [more]
PHD1_SCHPO2.616e-7356.33Histone deacetylase phd1 OS=Schizosaccharomyces po... [more]
HDA7_ARATH6.030e-7057.26Histone deacetylase 7 OS=Arabidopsis thaliana GN=H... [more]
HDAC8_RAT5.657e-6047.53Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac... [more]
HDAC8_MOUSE5.657e-6047.53Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=... [more]
HDAC8_HUMAN7.389e-6047.98Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=... [more]
HDAC8_XENTR4.789e-5947.60Histone deacetylase 8 OS=Xenopus tropicalis GN=hda... [more]
HDAC8_XENLA1.393e-5846.72Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666424 ID=EY666424; Name=EY666424; organism=Citrus sinensis; type=EST; length=812bp
CCACGCGTCCGTTCCATGCCGATGATTATGTCTCCTTCCTCAGGAGTATC
ACCCCTGAGACTCAGCAGGATCAGCTTAGGCAGCTCAAGCGCTTTAATGT
TGGTGAAGATTGCCCTGTCTTTGACGGTCTTTTCTCCTTCTGTCAAACTT
ATGCTGGGGGCTCTGTTGGTGGTGCTGTCAAGTTGAATCACGGCCTCTGT
GATATTGCTATCAATTGGGCCGGTGGCCTTCATCATGCTAAGAAATGTGA
AGCTTCCGGATTCTGTTATGTCAATGACATTGTCTTGGCCATTTTGGAGC
TACTTAAGCAGCATGAGCGTGTATTATATGTAGATATTGATATCCATCAT
GGAGATGGCGTGGAGGAAGCATTTTATACAACTGATAGGGTAATGACTGT
TTCATTCCATAAGTTCGGAGATTATTTTCCTGGTACAGGGGATATACGTG
ATATTGGTTATTCGAAAGGAAAGTTCTACTCCCTTAATGTTCCTCTTGAT
GATGGTATCGATGATGAGAGCTACCATTACTTGTTCAAACCGATAATCGG
AAAAGTGATGGAAGTTTTTAGACCTGGTGCTGTGGCCCTCCAATGTGGTG
CTGACTCATTGTCTGGGGATAGGTTAGAATCCTTCATCTTTTCAATTAAA
GGGCATGCAAAAGGGGTCAAATTTATTAAAATATTCCATGTGCCTCTGTT
GCTGCTGGGTGGGGGGGGGTAACCCTATTCGAATTGTTGCTCCCTGGTTG
GGGTCACAAAAAGGGAATTTGCCTTTGGAACAAAAAGTTGAAGAACAAAA
TCCCCAAGGATT
back to top