EY666424

Overview
NameEY666424
Unique NameEY666424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDAC7_HUMAN (Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.193e-17
Identity = 44/137 (32.12%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  231 HHAKKCEASGFCYVNDIVLAILELLKQHE--RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID----DESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSG 617
            HHA    A GFC+ N + +A  +L +Q +  ++L VD D+HHG+G ++ FY    V+ +S H+   G++FPG+G + ++G   G+ +++NV    G+D    D  Y   F+ ++  +   F P  V +  G D+  G
Sbjct:  669 HHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEG 805          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDAC4_RAT (Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.559e-17
Identity = 45/138 (32.61%), Postives = 78/138 (56.52%), Query Frame = 3
Query:  231 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID----DESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSG 617
            HHA++    GFCY N + +A  +LL+Q     ++L VD D+HHG+G ++AFY    V+ +S H++  G++FPG+G   ++G   G  +++N+    G+D    D  Y   F+ ++  +   F P  V +  G D++ G
Sbjct:  795 HHAEESTPMGFCYFNSVAIAA-KLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIANEFAPDVVLVSSGFDAVEG 931          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: CLR3_SCHPO (Histone deacetylase clr3 OS=Schizosaccharomyces pombe GN=clr3 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.559e-17
Identity = 51/152 (33.55%), Postives = 82/152 (53.95%), Query Frame = 3
Query:  231 HHAKKCEASGFCYVNDIVLAILELLKQH----ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGT--GDIRDIGYSKGKFYSLNVPLD-DGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHA 659
            HHA+  +  GFC  N++ +    +L++     +RVL VD DIHHG+G + AFY    V+ VS H++  G ++PGT  G   + G   G   ++N+P    G+ D  Y Y F+ ++  V   F P  V + CG D+ +GD +  F+ +   +A
Sbjct:  194 HHAEPHKPGGFCLFNNVSVTARSMLQRFPDKIKRVLIVDWDIHHGNGTQMAFYDDPNVLYVSLHRYENGRFYPGTNYGCAENCGEGPGLGRTVNIPWSCAGMGDGDYIYAFQRVVMPVAYEFDPDLVIVSCGFDAAAGDHIGQFLLTPAAYA 345          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDAC4_HUMAN (Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 2.036e-17
Identity = 45/138 (32.61%), Postives = 79/138 (57.25%), Query Frame = 3
Query:  231 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID----DESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSG 617
            HHA++    GFCY N + +A  +LL+Q     ++L VD D+HHG+G ++AFY+   V+ +S H++  G++FPG+G   ++G   G  +++N+    G+D    D  Y   F+ ++  +   F P  V +  G D++ G
Sbjct:  802 HHAEESTPMGFCYFNSVAVAA-KLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEG 938          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDAC7_MOUSE (Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.659e-17
Identity = 45/138 (32.61%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  231 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID----DESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSG 617
            HHA    A GFC+ N + +A  +L +QH    ++L VD D+HHG+G ++ FY    V+ +S H+   G++FPG+G + ++G   G+ +++NV    G+D    D  Y   F+ ++  +   F P  V +  G D+  G
Sbjct:  656 HHADHSTAMGFCFFNSVAIACRQL-QQHGKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGTGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFAPDLVLVSAGFDAAEG 792          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDA15_ARATH (Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.472e-17
Identity = 58/177 (32.77%), Postives = 88/177 (49.72%), Query Frame = 3
Query:  147 TYAGGSVGGAVKLNHGLC-DIAINWAGGL------------HHAKKCEASGFCYVNDI-VLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLD-DGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRL 626
            TYA      A +L  GLC D+A +   G             HHA    A GFC  N+  V A++      ++VL VD D+HHG+G +E F     V+ +S H+   G ++PGTG   ++G + G+ Y +NVP    G+ D+ Y + F+ ++  +   F P  V +  G D+  GD L
Sbjct:  235 TYANEYSARAARLAAGLCTDLATDIFTGRVKNGFALVRPPGHHAGVRHAMGFCLHNNAAVAALVAQAAGAKKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGIFYPGTGAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPDFVIISAGFDAARGDPL 411          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: Y535_METJA (Uncharacterized protein MJ0535 OS=Methanocaldococcus jannaschii GN=MJ0535 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.535e-17
Identity = 44/127 (34.65%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  252 ASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLES 632
            ++GFC  N+I  A        ++V+ +D D+HHG+G +E F+  +RV+ + FH+ G Y PGTGDI DIG  + K   +N+P      D  Y + +  I+  ++  F P  V +  G D+   D L S
Sbjct:  136 SNGFCIFNNIAGAARLAKNYMKKVIIIDFDVHHGNGTQEIFWNDNRVIHIDFHQRGIY-PGTGDILDIGGEEAKGTKINLPFPAHSTDADYIFAWNEIVEPILNYFSPDTVLVSAGFDAFINDGLAS 261          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDA18_ARATH (Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.535e-17
Identity = 69/236 (29.24%), Postives = 115/236 (48.73%), Query Frame = 3
Query:   15 HADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGL--CDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH-----ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK--FGDYFP--GTGDIRDIGYSKGKFYSLNVPLDD-GIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIF 686
            H   +V+ ++SI+  T++   R+ K  +  +   +  G        AG  V  A K+  G   C  AI    G HHA+  EA GFC  N++ +A   LL +      +++L VD DIHHG+G ++ F+   RV+  S H+   G ++P    GD   +G   G+ +++NVP +  G  D  Y  ++  I+  V + F+P  + L  G D+  GD L     +  G++  +K +  F
Sbjct:  119 HTKKHVNLVKSIS--TKKKDSRRNKIASQLDSIYLNGGSSEAAYLAAGSVVKVAEKVAEGELDCGFAIVRPPG-HHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIHHGNGTQKMFWKDSRVLIFSVHRHDHGSFYPFGDDGDFNMVGEGPGEGFNINVPWEQGGCGDADYLAVWNHILIPVTKEFKPDIILLSAGFDAAIGDPLGGCCVTPYGYSVMLKKLMEF 351          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDAC4_MOUSE (Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17
Identity = 44/138 (31.88%), Postives = 78/138 (56.52%), Query Frame = 3
Query:  231 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID----DESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSG 617
            HHA++    GFCY N + +A  +LL+Q     ++L VD D+HHG+G ++AFY    V+ +S H++  G++FPG+G   ++G   G  +++N+    G++    D  Y   F+ ++  +   F P  V +  G D++ G
Sbjct:  794 HHAEESTPMGFCYFNSVAVAA-KLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLEPPMGDAEYLAAFRTVVMPIANEFAPDVVLVSSGFDAVEG 930          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDA5_ARATH (Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 69/236 (29.24%), Postives = 113/236 (47.88%), Query Frame = 3
Query:   15 HADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGL--CDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH-----ERVLYVDIDIHHGDGVEEAFYTTDRVM--TVSFHKFGDYFPG--TGDIRDIGYSKGKFYSLNVPLDDG-IDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGDRLESFIFSIKGHAKGVKFIKIF 686
            H  D+V+ ++SI+  T+Q   R+ +  +      +  G        AG  V  A K+  G   C  AI    G HHA+  EA GFC  N++ +A   LL +      +++L VD D+HHG+G ++ F+   RV+  +V  H++G ++P    GD   +G   G+ +++NVP D G   D  Y   +  I+  V   F P  + L  G D+   D L     +  G++  +K +  F
Sbjct:   86 HTKDHVNLVKSIS--TKQKDYRRNRIASQLNSIYLNGGSSEAAYLAAGSVVKLAEKVAEGELDCGFAIVRPPG-HHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHEYGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDVIFLSAGFDAAINDPLGGCCVTPYGYSVMLKKLMEF 318          
The following BLAST results are available for this feature:
BLAST of EY666424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
HDAC7_HUMAN1.193e-1732.12Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=... [more]
HDAC4_RAT1.559e-1732.61Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac... [more]
CLR3_SCHPO1.559e-1733.55Histone deacetylase clr3 OS=Schizosaccharomyces po... [more]
HDAC4_HUMAN2.036e-1732.61Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=... [more]
HDAC7_MOUSE2.659e-1732.61Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=... [more]
HDA15_ARATH3.472e-1732.77Histone deacetylase 15 OS=Arabidopsis thaliana GN=... [more]
Y535_METJA4.535e-1734.65Uncharacterized protein MJ0535 OS=Methanocaldococc... [more]
HDA18_ARATH4.535e-1729.24Histone deacetylase 18 OS=Arabidopsis thaliana GN=... [more]
HDAC4_MOUSE5.923e-1731.88Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=... [more]
HDA5_ARATH1.010e-1629.24Histone deacetylase 5 OS=Arabidopsis thaliana GN=H... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666424 ID=EY666424; Name=EY666424; organism=Citrus sinensis; type=EST; length=812bp
CCACGCGTCCGTTCCATGCCGATGATTATGTCTCCTTCCTCAGGAGTATC
ACCCCTGAGACTCAGCAGGATCAGCTTAGGCAGCTCAAGCGCTTTAATGT
TGGTGAAGATTGCCCTGTCTTTGACGGTCTTTTCTCCTTCTGTCAAACTT
ATGCTGGGGGCTCTGTTGGTGGTGCTGTCAAGTTGAATCACGGCCTCTGT
GATATTGCTATCAATTGGGCCGGTGGCCTTCATCATGCTAAGAAATGTGA
AGCTTCCGGATTCTGTTATGTCAATGACATTGTCTTGGCCATTTTGGAGC
TACTTAAGCAGCATGAGCGTGTATTATATGTAGATATTGATATCCATCAT
GGAGATGGCGTGGAGGAAGCATTTTATACAACTGATAGGGTAATGACTGT
TTCATTCCATAAGTTCGGAGATTATTTTCCTGGTACAGGGGATATACGTG
ATATTGGTTATTCGAAAGGAAAGTTCTACTCCCTTAATGTTCCTCTTGAT
GATGGTATCGATGATGAGAGCTACCATTACTTGTTCAAACCGATAATCGG
AAAAGTGATGGAAGTTTTTAGACCTGGTGCTGTGGCCCTCCAATGTGGTG
CTGACTCATTGTCTGGGGATAGGTTAGAATCCTTCATCTTTTCAATTAAA
GGGCATGCAAAAGGGGTCAAATTTATTAAAATATTCCATGTGCCTCTGTT
GCTGCTGGGTGGGGGGGGGTAACCCTATTCGAATTGTTGCTCCCTGGTTG
GGGTCACAAAAAGGGAATTTGCCTTTGGAACAAAAAGTTGAAGAACAAAA
TCCCCAAGGATT
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