EY666424

Overview
NameEY666424
Unique NameEY666424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDA10_MOUSE (Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 53/216 (24.54%), Postives = 107/216 (49.54%), Query Frame = 3
Query:   15 HADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTY--AGGSVGGAVKLNHGLCDIAINWAGGL-----HHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFP--GTGDIRDIGYSKGKFYSLNVPLDD-GIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGD 620
            H+ +Y++ ++  T    +++L  L +         +D ++    T+  A  + G A++L   +   A++    L     HH+++  A+GFC  N++ LA     +++  +R+L VD D+HHG G++  F     V+  S+H++  G ++P     D   +G  +G+ +++N+P +  G+ +  Y   F  ++  +   F P  V +  G DS  GD
Sbjct:   64 HSPEYIALVQK-TQTLDKEELHALSK--------QYDAVYFHPDTFHCARLAAGAALQLVDAVLTGAVHNGLALVRPPGHHSQRAAANGFCVFNNVALAAKHAKQKYGLQRILIVDWDVHHGQGIQYIFNDDPSVLYFSWHRYEHGSFWPFLPESDADAVGQGQGQGFTVNLPWNQVGMGNADYLAAFLHVLLPLAFEFDPELVLVSAGFDSAIGD 270          
BLAST of EY666424 vs. ExPASy Swiss-Prot
Match: HDA10_HUMAN (Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 57/214 (26.64%), Postives = 99/214 (46.26%), Query Frame = 3
Query:   15 HADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGL-----HHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFP--GTGDIRDIGYSKGKFYSLNVPLDD-GIDDESYHYLFKPIIGKVMEVFRPGAVALQCGADSLSGD 620
            H+ +YVS +R    ETQ     +L+  +   D   F      C   A G+    ++L   +   A+     L     HH ++  A+GFC  N++ +A     ++H   R+L VD D+HHG G++  F     V+  S+H++  G ++P     D   +G  +G  +++N+P +  G+ +  Y   F  ++  +   F P  V +  G DS  GD
Sbjct:   64 HSPEYVSLVR----ETQVLGKEELQALSGQFDAIYFHPSTFHCARLAAGA---GLQLVDAVLTGAVQNGLALVRPPGHHGQRAAANGFCVFNNVAIAAAHAKQKHGLHRILVVDWDVHHGQGIQYLFEDDPSVLYFSWHRYEHGRFWPFLRESDADAVGRGQGLGFTVNLPWNQVGMGNADYVAAFLHLLLPLAFEFDPELVLVSAGFDSAIGD 270          
The following BLAST results are available for this feature:
BLAST of EY666424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
HDA10_MOUSE4.392e-1224.54Histone deacetylase 10 OS=Mus musculus GN=Hdac10 P... [more]
HDA10_HUMAN7.492e-1226.64Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666424 ID=EY666424; Name=EY666424; organism=Citrus sinensis; type=EST; length=812bp
CCACGCGTCCGTTCCATGCCGATGATTATGTCTCCTTCCTCAGGAGTATC
ACCCCTGAGACTCAGCAGGATCAGCTTAGGCAGCTCAAGCGCTTTAATGT
TGGTGAAGATTGCCCTGTCTTTGACGGTCTTTTCTCCTTCTGTCAAACTT
ATGCTGGGGGCTCTGTTGGTGGTGCTGTCAAGTTGAATCACGGCCTCTGT
GATATTGCTATCAATTGGGCCGGTGGCCTTCATCATGCTAAGAAATGTGA
AGCTTCCGGATTCTGTTATGTCAATGACATTGTCTTGGCCATTTTGGAGC
TACTTAAGCAGCATGAGCGTGTATTATATGTAGATATTGATATCCATCAT
GGAGATGGCGTGGAGGAAGCATTTTATACAACTGATAGGGTAATGACTGT
TTCATTCCATAAGTTCGGAGATTATTTTCCTGGTACAGGGGATATACGTG
ATATTGGTTATTCGAAAGGAAAGTTCTACTCCCTTAATGTTCCTCTTGAT
GATGGTATCGATGATGAGAGCTACCATTACTTGTTCAAACCGATAATCGG
AAAAGTGATGGAAGTTTTTAGACCTGGTGCTGTGGCCCTCCAATGTGGTG
CTGACTCATTGTCTGGGGATAGGTTAGAATCCTTCATCTTTTCAATTAAA
GGGCATGCAAAAGGGGTCAAATTTATTAAAATATTCCATGTGCCTCTGTT
GCTGCTGGGTGGGGGGGGGTAACCCTATTCGAATTGTTGCTCCCTGGTTG
GGGTCACAAAAAGGGAATTTGCCTTTGGAACAAAAAGTTGAAGAACAAAA
TCCCCAAGGATT
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