CN184543

Overview
NameCN184543
Unique NameCN184543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6163 contig Csv1_Contig6163:165..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_EUPCR (Histone H4 OS=Euplotes crassus PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 1.033e-29
Identity = 63/78 (80.77%), Postives = 72/78 (92.31%), Query Frame = -2
Query:  199 RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 432
            +K LR+ I G+TKPAIRRLARRGGVKRIS L+YEETR VLK FLE+VIRD+VTYTEHA+RKTVTA+DVVYALKRQG+T
Sbjct:   24 KKALRETILGVTKPAIRRLARRGGVKRISSLVYEETRAVLKGFLESVIRDSVTYTEHAKRKTVTALDVVYALKRQGKT 101          
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_TETTH (Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 3.005e-29
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = -2
Query:  199 RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 432
            RK  + +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   20 RKSNKASIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97          
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H42_TETPY (Histone H4, minor OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 3.005e-29
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = -2
Query:  199 RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 432
            RK  + +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   20 RKSNKASIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97          
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H41_TETPY (Histone H4, major OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.142e-28
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = -2
Query:  199 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 414
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97          
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_ENTHI (Histone H4 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.491e-28
Identity = 61/77 (79.22%), Postives = 70/77 (90.91%), Query Frame = -2
Query:  199 KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 429
            K  +D ++GITKPAIRRLARRGGVKRI+G +Y+ETR VLK FLE VIRD+VTYTEHA+R+TVTAMDVVYALKRQGRT
Sbjct:   37 KTQQDALKGITKPAIRRLARRGGVKRINGAVYDETRNVLKQFLEQVIRDSVTYTEHAKRRTVTAMDVVYALKRQGRT 113          
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_DICDI (Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.322e-28
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = -2
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            H+K  +++I GITKPAIRRLARRGGVKRIS  IYEETR VL+ FL NVIRD+V YTEHA R+TVTAMDVVYALKRQGRT
Sbjct:   24 HKKTQKEHINGITKPAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALKRQGRT 102          
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4G_HUMAN (Histone H4-like protein type G OS=Homo sapiens GN=HIST1H4G PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.339e-28
Identity = 65/79 (82.28%), Postives = 67/79 (84.81%), Query Frame = -2
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVL DNIQGITK  IRRLAR GGVKRI GLIYEETR V K+FLENVI  AVT TEHA+RKTVTAM VVY LKRQGRT
Sbjct:   19 HRKVLSDNIQGITKCTIRRLARHGGVKRILGLIYEETRRVFKVFLENVIWYAVTNTEHAKRKTVTAMAVVYVLKRQGRT 97          
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_ENCCU (Histone H4 OS=Encephalitozoon cuniculi GN=HHF1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.221e-11
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = -2
Query:  205 ITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 402
            I+KPAIRR+ARR GV+R+ G  ++E     + ++ + +  A  Y  HA+RKT+T  D++++LKR G
Sbjct:   32 ISKPAIRRIARRAGVRRVGGGCFKEINNAAREYIRDTLSIACIYATHAKRKTITCSDILHSLKRMG 97          
The following BLAST results are available for this feature:
BLAST of CN184543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
H4_EUPCR1.033e-2980.77Histone H4 OS=Euplotes crassus PE=1 SV=3[more]
H4_TETTH3.005e-2982.05Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1... [more]
H42_TETPY3.005e-2982.05Histone H4, minor OS=Tetrahymena pyriformis PE=1 S... [more]
H41_TETPY1.142e-2886.11Histone H4, major OS=Tetrahymena pyriformis PE=1 S... [more]
H4_ENTHI1.491e-2879.22Histone H4 OS=Entamoeba histolytica PE=3 SV=1[more]
H4_DICDI3.322e-2878.48Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1... [more]
H4G_HUMAN4.339e-2882.28Histone H4-like protein type G OS=Homo sapiens GN=... [more]
H4_ENCCU8.221e-1142.42Histone H4 OS=Encephalitozoon cuniculi GN=HHF1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184543 ID=CN184543; Name=CN184543; organism=Citrus sinensis; type=EST; length=436bp
GAGGGATTCTCATTGCAAAAGATGAAAACACCAATGAACCAAAAAAATAA
AAAACCCCTAGGAAACGGCAAATACAAGTTGCCTCCAATTTAAACCCACT
CGCTAGACACAACCACGTTCACTGATTTACAGGAAAAAAGGAAAACCCTA
AAACACAAAATACAAAACGACGCCACATCAACCACCAAACCCATAGAGAG
TCCTGCCCTGCCTCTTGAGCGCATAAACGACATCCATGGCGGTCACCGTC
TTTCGGCGAGCGTGCTCAGTGTAGGTCACAGCATCGCGAATGACGTTCTC
CAAAAAGATCTTGAGGACGCCGCGTGTCTCCTCGTAGATGAGACCGCTGA
TTCTCTTAACGCCTCCTCTTCTGGCCAAACGGCGAATAGCCGGCTTGGTG
ATGCCCTGAATGTTATCACGCAACACCTTGCGATGC
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