CN184543

Overview
NameCN184543
Unique NameCN184543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6163 contig Csv1_Contig6163:165..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_DROME (Histone H4 OS=Drosophila melanogaster GN=His4 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.758e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_DROMA (Histone H4 OS=Drosophila mauritiana GN=His4 PE=3 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 1.758e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_DROHY (Histone H4 OS=Drosophila hydei GN=His4 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.758e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_DROER (Histone H4 OS=Drosophila erecta GN=His4 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.758e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_CHITH (Histone H4 OS=Chironomus thummi thummi GN=His4 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.758e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_CHICK (Histone H4 OS=Gallus gallus GN=H4-I PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.758e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_CHAVR (Histone H4 OS=Chaetopterus variopedatus PE=3 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 1.758e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_CAIMO (Histone H4 OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.758e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_BOVIN (Histone H4 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.758e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_ASEAQ (Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.758e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
The following BLAST results are available for this feature:
BLAST of CN184543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
H4_DROME1.758e-3797.47Histone H4 OS=Drosophila melanogaster GN=His4 PE=1... [more]
H4_DROMA1.758e-3797.47Histone H4 OS=Drosophila mauritiana GN=His4 PE=3 S... [more]
H4_DROHY1.758e-3797.47Histone H4 OS=Drosophila hydei GN=His4 PE=3 SV=2[more]
H4_DROER1.758e-3797.47Histone H4 OS=Drosophila erecta GN=His4 PE=3 SV=2[more]
H4_CHITH1.758e-3797.47Histone H4 OS=Chironomus thummi thummi GN=His4 PE=... [more]
H4_CHICK1.758e-3797.47Histone H4 OS=Gallus gallus GN=H4-I PE=1 SV=2[more]
H4_CHAVR1.758e-3797.47Histone H4 OS=Chaetopterus variopedatus PE=3 SV=3[more]
H4_CAIMO1.758e-3797.47Histone H4 OS=Cairina moschata PE=3 SV=2[more]
H4_BOVIN1.758e-3797.47Histone H4 OS=Bos taurus PE=1 SV=2[more]
H4_ASEAQ1.758e-3797.47Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184543 ID=CN184543; Name=CN184543; organism=Citrus sinensis; type=EST; length=436bp
GAGGGATTCTCATTGCAAAAGATGAAAACACCAATGAACCAAAAAAATAA
AAAACCCCTAGGAAACGGCAAATACAAGTTGCCTCCAATTTAAACCCACT
CGCTAGACACAACCACGTTCACTGATTTACAGGAAAAAAGGAAAACCCTA
AAACACAAAATACAAAACGACGCCACATCAACCACCAAACCCATAGAGAG
TCCTGCCCTGCCTCTTGAGCGCATAAACGACATCCATGGCGGTCACCGTC
TTTCGGCGAGCGTGCTCAGTGTAGGTCACAGCATCGCGAATGACGTTCTC
CAAAAAGATCTTGAGGACGCCGCGTGTCTCCTCGTAGATGAGACCGCTGA
TTCTCTTAACGCCTCCTCTTCTGGCCAAACGGCGAATAGCCGGCTTGGTG
ATGCCCTGAATGTTATCACGCAACACCTTGCGATGC
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