CN184542

Overview
NameCN184542
Unique NameCN184542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN184542 vs. ExPASy Swiss-Prot
Match: NEK4_ORYSJ (Serine/threonine-protein kinase Nek4 OS=Oryza sativa subsp. japonica GN=NEK4 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = -1 
Query:  372 RNSSDARRHRFDTSSYQQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGPGKVSPRETAIWLTKSIK 575
            +  +   +   D +S++QRAEALEGLLE SA LL+  R +EL ++L+PFG  KVSPRETAIWL +S K
Sbjct:  864 KEEASPAKEALDVTSFRQRAEALEGLLELSADLLENNRLEELAIVLQPFGKNKVSPRETAIWLARSFK 931
[Close]
BLAST of CN184542 vs. ExPASy Swiss-Prot
Match: NEK6_ORYSJ (Serine/threonine-protein kinase Nek6 OS=Oryza sativa subsp. japonica GN=NEK6 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = -1 
Query:  375 QQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGPGKVSPRETAIWLTKSI 527
            QQRA+ALE LLE  AKLL+QER +EL  +L+PFG G VS RETAIWLTKS+
Sbjct:  471 QQRADALESLLELCAKLLKQERLEELAGVLRPFGEGAVSSRETAIWLTKSL 521
[Close]
BLAST of CN184542 vs. ExPASy Swiss-Prot
Match: NEK6_ARATH (Serine/threonine-protein kinase Nek6 OS=Arabidopsis thaliana GN=NEK6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = -1 
Query:  348 QQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGPGKVSPRETAIWLTKSIKENTAKQDD 527
            ++RAEALE LLE  A LL+QE++DEL  +LKPFG   VS RETAIWLTKS+     KQ+D
Sbjct:  352 EERAEALESLLELCAGLLRQEKFDELEGVLKPFGDETVSSRETAIWLTKSLMNVKRKQND 411
The following BLAST results are available for this feature:
BLAST of CN184542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NEK4_ORYSJ9.800e-1554.41Serine/threonine-protein kinase Nek4 OS=Oryza sati... [more]
NEK6_ORYSJ1.565e-1270.59Serine/threonine-protein kinase Nek6 OS=Oryza sati... [more]
NEK6_ARATH2.043e-1261.67Serine/threonine-protein kinase Nek6 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184542 ID=CN184542; Name=CN184542; organism=Citrus sinensis; type=EST; length=617bp
ATGAAGTGTTCATACAGATTGAACTTACAAGATTACAATACATAACTACA
ATTTGTCCATTGTTTGTGCAATAACTATCTGCCAAGATACAAATGTGGTC
CTCAACTTTAGAAGCTAAGAATTTGTATCGATAACCTATCATACAACACC
ATCCAGGTTAAACCAAAATCAACAAATCACAGACATGGGAAATATGGAAT
TAAAATCCACTACAACCTACAAATTAGTGTTTGCGTAAGTGCCTAGTTCC
TCAATCACTGACCCAAAATAGAAAAAAATACTCAGCTCTAAAGATTGTCG
AAGCTGCAGATATGGTACACACATGTGCTGGTAGTTCATGGGTGTTGATC
ATCTTGCTTGGCAGTGTTTTCCTTGATGCTCTTGGTTAACCAGATTGCTG
TCTCCCTGGGTGAAACTTTCCCGGGTCCGAATGGCTTTAGTAGCACCCCA
AGCTCATCATACCTTTCCTGTTGCAGCAATTTTGCACTAAATTCGAGCAA
GCCTTCCAAAGCTTCGGCACGTTGCTGGTATGATGAAGTGTCAAACCGAT
GGCGGCGTGCGTCTGATGAGTTGCGGCTGGATGCCCCTGCCGTTGCATTT
TGATCTGATGAGTTGCT
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