CN184538

Overview
NameCN184538
Unique NameCN184538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.031e-33
Identity = 58/120 (48.33%), Postives = 80/120 (66.67%), Query Frame = 1
Query:   61 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            +A G   ++    +++A +AEFI+TL+FVFAG GS +A+ +LT+ GA  P+                     NISGGH+NPAVTFG  VGG+I++L G+ YWIAQLLG+++ACLLLKFVT
Sbjct:    4 LAFGSLGDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVT 123          

HSP 2 Score: 49.2914 bits (116), Expect = 1.031e-33
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 2
Query:  455 SGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            +G+     VV EIV+TF LVYTVYATA DPKKGS
Sbjct:  134 AGISELEGVVMEIVITFALVYTVYATAADPKKGS 167          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.749e-33
Identity = 56/121 (46.28%), Postives = 73/121 (60.33%), Query Frame = 1
Query:   58 NIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            NIA G   ++    +L+A +AEFISTL+FVFAG GS +A+ KLT      P+                     NISGGHVNPAVTFG  +GG I++L G+ YWIAQLLG+ V  +L++F T
Sbjct:    4 NIAFGRFDDSFSAASLKAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCT 124          

HSP 2 Score: 58.151 bits (139), Expect = 1.749e-33
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 2
Query:  455 SGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            SGVGA+  VV EI++TFGLVYTVYATA DPKKGS
Sbjct:  134 SGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGS 167          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.318e-28
Identity = 65/143 (45.45%), Postives = 83/143 (58.04%), Query Frame = 1
Query:   43 IMPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT--QRPDHICFCSLIWSW 465
            + P R   VG   +ATHPD +RAA++EFI+T IFVFA EGS ++  K+ H+  +T                       NISGGHVNPAVTFGA VGG +SL+R +LYW+AQLLG+  A LLL+  T   RP      S +  W
Sbjct:    5 VRPGRRFTVGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHD-MSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGMRPPGFALASGVGDW 146          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.391e-27
Identity = 63/141 (44.68%), Postives = 82/141 (58.16%), Query Frame = 1
Query:   49 PIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT--QRPDHICFCSLIWSW 465
            P R   VG   +ATHPD +RAA++EF++T IFVFA EGS ++  KL +   +TP                      NISGGHVNPA+TFGA +GG +SL+R + YW+AQLLG+ VA LLL+  T   RP      S +  W
Sbjct:    8 PGRRFTVGRSEDATHPDTIRAAISEFLATAIFVFAAEGSILSLGKL-YQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPPGFALASGVGDW 147          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.800e-27
Identity = 55/118 (46.61%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   64 AVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFV 417
            A+GH REA+    +RA LAE I T +FVFAG GS MA  KL   G +T                       ++SGGH+NPAVT G    G I+L R  LY  AQLLGST+ACLLL F+
Sbjct:    5 ALGHHREASDAGCVRAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLACLLLAFL 122          

HSP 2 Score: 42.743 bits (99), Expect = 7.800e-27
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 2
Query:  446 ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKK 550
            AL +GVGA   V+ E V+TF L++ VYAT +DP++
Sbjct:  133 ALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRR 167          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.017e-25
Identity = 59/120 (49.17%), Postives = 81/120 (67.50%), Query Frame = 1
Query:   61 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            +A G  R++    +L+A +AEFI+TL+FVFAG GS +A+++LT  GA  P+                     NISGGH+NPAVTFG  VGG+I++L GILYW+AQLLG++VAC LL++VT
Sbjct:    4 LAFGSFRDSLSAASLKAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQYVT 123          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.608e-25
Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 1
Query:   61 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            +A G   ++    +++A +AEFI+TL+FVFAG GS +AF +LT+ GA  P+                     N SGGH+NPAVTFG  VGG+I++L G+ YW+AQLLG++VACLLL+FVT
Sbjct:    4 LAFGSVGDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVT 123          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.750e-23
Identity = 48/109 (44.04%), Postives = 58/109 (53.21%), Query Frame = 1
Query:   94 PDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            P A RAAL+EF++T +FVFA EGS     K+ +    T                       N SGGHVNPAVTFG  VG  IS  R  LYW AQLLG+ +A LLL+  +
Sbjct:   25 PGATRAALSEFVATAVFVFAAEGSVYGLWKM-YRDTGTLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRLAS 132          

HSP 2 Score: 45.0542 bits (105), Expect = 2.750e-23
Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 2
Query:  425 GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKG 553
            G     F L   +   +A++ E+VMTFGLVYTVYATA+D + G
Sbjct:  134 GMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSG 176          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.865e-20
Identity = 52/123 (42.28%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   52 IRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            ++ I +GH  EA  PD ++A + EFI+T +FVFAG GS MA + L  N                           +ISGGH+NPAVT G  +GG+IS+ R  LYWI QLL S+ AC LL ++T
Sbjct:    1 MKKIELGHHSEAAKPDCIKALIVEFITTFLFVFAGVGSAMATDSLVGNTL----VGLFAVAVAHAFVVAVMISAGHISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLSYLT 119          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.888e-20
Identity = 55/120 (45.83%), Postives = 70/120 (58.33%), Query Frame = 1
Query:   61 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            +A+GH REAT P  LRA +AE + T +FVF+G GS MA  KL   G +T                       ++SGGH+NPAVT G   GG+I+L R  LY  AQLLGS++ACLLL  +T
Sbjct:    4 LALGHHREATDPGCLRAVVAELLLTFLFVFSGVGSAMAAAKLG-GGGDTIMGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALT 122          
The following BLAST results are available for this feature:
BLAST of CN184538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
TIP21_ORYSJ1.031e-3348.33Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP22_ORYSJ1.749e-3346.28Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP31_MAIZE8.318e-2845.45Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP31_ORYSJ5.391e-2744.68Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP44_MAIZE7.800e-2746.61Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
TIP23_MAIZE1.017e-2549.17Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP22_MAIZE8.608e-2547.50Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP32_ORYSJ2.750e-2344.04Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP41_ARATH2.865e-2042.28Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP43_ORYSJ4.888e-2045.83Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184538 ID=CN184538; Name=CN184538; organism=Citrus sinensis; type=EST; length=558bp
CTTATCACACCCCAAAGGTTCAATCTTCATCGTTTGATCTCCATCATGCC
GATCAGAAACATTGCCGTTGGCCATCCCCGTGAGGCGACTCATCCAGATG
CCCTAAGGGCAGCCCTAGCAGAGTTCATCTCAACTCTAATATTTGTCTTT
GCCGGTGAAGGCTCGGGCATGGCCTTCAACAAGCTCACTCACAACGGCGC
CAACACCCCCTCCGGCCTCGTCGCCGCCTCTGTTGCTCACGCTTTCGCCC
TTTTCGTTGCTGTCGCCGTTGGCGCCAACATTTCCGGTGGCCACGTTAAT
CCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGTAACATCTCCCTTCTACG
AGGCATCCTCTACTGGATCGCCCAGCTTCTTGGATCCACCGTCGCATGCT
TGCTTCTTAAGTTCGTTACCCAACGGCCAGACCACATCTGCTTTTGCTCT
CTCATCTGGAGTTGGTGCATGGAACGCAGTCGTTTTCGAGATCGTGATGA
CATTCGGACTAGTGTACACAGTGTATGCCACAGCCCTGGACCCTAAGAAG
GGAAGCTT
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