CN184538

Overview
NameCN184538
Unique NameCN184538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 6.834e-12
Identity = 36/116 (31.03%), Postives = 55/116 (47.41%), Query Frame = 1
Query:   82 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK 411
            E T     RA +AEF++TL+F++    + + +   +  GAN                               +SGGH+NPAVTFG F+   +SL+R +LY +AQ LG+     L+K
Sbjct:   34 ELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVK 149          

HSP 2 Score: 30.0314 bits (66), Expect = 6.834e-12
Identity = 16/36 (44.44%), Postives = 22/36 (61.11%), Query Frame = 2
Query:  449 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            LS G      +  EI+ TF LVYTV+ +A DPK+ +
Sbjct:  166 LSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNA 200          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.839e-12
Identity = 36/116 (31.03%), Postives = 55/116 (47.41%), Query Frame = 1
Query:   82 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK 411
            E T     RA +AEF++TL+F++    + + +   T   A+ P                             +SGGH+NPAVTFG F+   +SL+R +LY +AQ LG+     L+K
Sbjct:   29 ELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVK 144          

HSP 2 Score: 30.4166 bits (67), Expect = 6.839e-12
Identity = 16/36 (44.44%), Postives = 23/36 (63.89%), Query Frame = 2
Query:  449 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            LS+G      +  EI+ TF LVYTV+ +A DPK+ +
Sbjct:  161 LSAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNA 195          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.357e-12
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  103 LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTP-SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            +RA LAE + T +FVF G  + MA       G   P +                     ++SGGH+NPAVT G  V G+I+ LR +LY  AQLL S+ AC+LL+F++
Sbjct:   23 VRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLS 129          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.153e-11
Identity = 35/108 (32.41%), Postives = 52/108 (48.15%), Query Frame = 1
Query:  106 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK 411
            RA +AEF++TL+F++    + + +   T   A+                               ISGGH+NPAVTFG F+   +SL+R ILY +AQ LG+     L+K
Sbjct:   36 RAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVK 143          

HSP 2 Score: 30.4166 bits (67), Expect = 1.153e-11
Identity = 19/51 (37.25%), Postives = 28/51 (54.90%), Query Frame = 2
Query:  404 FLSSLPNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            F SS  +     A  L++G      +  EI+ TF LVYTV+ +A DPK+ +
Sbjct:  145 FQSSFYDRYGGGANELAAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNA 194          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.496e-11
Identity = 35/108 (32.41%), Postives = 52/108 (48.15%), Query Frame = 1
Query:  106 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK 411
            RA +AEF++TL+F++    + + +   T   A+ P                             ISGGH+NPAVTFG F+   +SL+R +LY  AQ LG+     L+K
Sbjct:   41 RAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVK 148          

HSP 2 Score: 29.6462 bits (65), Expect = 1.496e-11
Identity = 15/36 (41.67%), Postives = 23/36 (63.89%), Query Frame = 2
Query:  449 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            +S+G      +  EI+ TF LVYTV+ +A DPK+ +
Sbjct:  165 VSAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNA 199          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.521e-11
Identity = 36/108 (33.33%), Postives = 52/108 (48.15%), Query Frame = 1
Query:  106 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK 411
            RA +AEFI+TL+F++    + + +   T   A+                               ISGGH+NPAVTFG F+   +SL+R ILY +AQ LG+     L+K
Sbjct:   42 RAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVK 149          

HSP 2 Score: 30.8018 bits (68), Expect = 2.521e-11
Identity = 19/51 (37.25%), Postives = 28/51 (54.90%), Query Frame = 2
Query:  404 FLSSLPNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            F S+  N     A  L++G      +  EI+ TF LVYTV+ +A DPK+ +
Sbjct:  151 FQSAYFNRYGGGANTLAAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNA 200          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.522e-11
Identity = 38/116 (32.76%), Postives = 54/116 (46.55%), Query Frame = 1
Query:   82 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK 411
            E T     RA +AEFI+TL+F++    + + +   +    NT                              ISGGH+NPAVTFG F+   +SL+R +LY IAQ LG+     L+K
Sbjct:   33 ELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVK 148          

HSP 2 Score: 28.8758 bits (63), Expect = 2.522e-11
Identity = 16/36 (44.44%), Postives = 22/36 (61.11%), Query Frame = 2
Query:  449 LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            LS G      +  EI+ TF LVYTV+ +A DPK+ +
Sbjct:  165 LSDGYSKGTGLGAEIIGTFVLVYTVF-SATDPKRNA 199          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.524e-11
Identity = 38/108 (35.19%), Postives = 55/108 (50.93%), Query Frame = 1
Query:  106 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTQRP 429
            RAA+AEFI+TL+F++    + + + K T   A+                         ISGGH+NPAVTFG F+   +SLLR ++Y IAQ  G+     L+K   + P
Sbjct:   40 RAAIAEFIATLLFLYITVATVIGYKKETDPCASV--GLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGP 145          

HSP 2 Score: 26.5646 bits (57), Expect = 2.524e-11
Identity = 15/39 (38.46%), Postives = 24/39 (61.54%), Query Frame = 2
Query:  440 AFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            A +++ G     A   E++ TF LVYTV+ +A DPK+ +
Sbjct:  153 ANSVALGYNKGTAFGAELIGTFVLVYTVF-SATDPKRSA 190          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 3.274e-11
Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = 1
Query:  106 RAALAEFISTLIFVFAGEGSGMAFNKLTH---NGANTPSXXXXXXXXXXXXXXXXXXXXX---NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK 411
            RA +AEF++TL+F++    + + +   T    NGA+                            +SGGH+NPAVT G F+   +SL+R +LY  AQ LG+     L+K
Sbjct:   39 RALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVK 146          

HSP 2 Score: 32.3426 bits (72), Expect = 3.274e-11
Identity = 20/51 (39.22%), Postives = 29/51 (56.86%), Query Frame = 2
Query:  404 FLSSLPNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            F SSL +     A  L++G      +  EI+ TF LVYTV+ +A DPK+ +
Sbjct:  148 FQSSLYDRYGGGANELAAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNA 197          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 4.251e-11
Identity = 33/106 (31.13%), Postives = 51/106 (48.11%), Query Frame = 1
Query:  106 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGAN----TPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK 411
            RA +AEFI+TL+F++    + + +   T    N    T                        ISGGH+NPAVTFG  +   ++L+R ++Y +AQ LG+     L+K
Sbjct:   38 RALIAEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVK 143          

HSP 2 Score: 31.5722 bits (70), Expect = 4.251e-11
Identity = 18/39 (46.15%), Postives = 23/39 (58.97%), Query Frame = 2
Query:  440 AFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            A  LS G      V  EI+ TF LVYTV+ +A DPK+ +
Sbjct:  157 ANGLSDGYSIGTGVAAEIIGTFVLVYTVF-SATDPKRSA 194          
The following BLAST results are available for this feature:
BLAST of CN184538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PIP23_ORYSJ6.834e-1231.03Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP25_MAIZE6.839e-1231.03Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
TIP41_MAIZE8.357e-1238.32Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
PIP25_ORYSJ1.153e-1132.41Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP26_MAIZE1.496e-1132.41Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP21_ORYSJ2.521e-1133.33Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP22_ORYSJ2.522e-1132.76Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP1_ATRCA2.524e-1135.19Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP24_ORYSJ3.274e-1131.48Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP25_ARATH4.251e-1131.13Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184538 ID=CN184538; Name=CN184538; organism=Citrus sinensis; type=EST; length=558bp
CTTATCACACCCCAAAGGTTCAATCTTCATCGTTTGATCTCCATCATGCC
GATCAGAAACATTGCCGTTGGCCATCCCCGTGAGGCGACTCATCCAGATG
CCCTAAGGGCAGCCCTAGCAGAGTTCATCTCAACTCTAATATTTGTCTTT
GCCGGTGAAGGCTCGGGCATGGCCTTCAACAAGCTCACTCACAACGGCGC
CAACACCCCCTCCGGCCTCGTCGCCGCCTCTGTTGCTCACGCTTTCGCCC
TTTTCGTTGCTGTCGCCGTTGGCGCCAACATTTCCGGTGGCCACGTTAAT
CCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGTAACATCTCCCTTCTACG
AGGCATCCTCTACTGGATCGCCCAGCTTCTTGGATCCACCGTCGCATGCT
TGCTTCTTAAGTTCGTTACCCAACGGCCAGACCACATCTGCTTTTGCTCT
CTCATCTGGAGTTGGTGCATGGAACGCAGTCGTTTTCGAGATCGTGATGA
CATTCGGACTAGTGTACACAGTGTATGCCACAGCCCTGGACCCTAAGAAG
GGAAGCTT
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