CN184535

Overview
NameCN184535
Unique NameCN184535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9784 contig Csv1_Contig9784:56..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y2736_MYCBO (UPF0678 fatty acid-binding protein-like protein Mb2736c OS=Mycobacterium bovis GN=Mb2736c PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.466e-23
Identity = 61/158 (38.61%), Postives = 92/158 (58.23%), Query Frame = 2
Query:   20 PAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE--------LVGNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 469
            PA+  +S LLG+W G+G+G YPTI  F+Y EE+ F H G KP + YTQ+T  +  G+P+H+E+GY R    G +E+V+A  +G+ E++ GTY+    VI+L+          L   A +V  + R + +   EL Y +QM       L+ HL AVL +
Sbjct:    7 PALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVG-KPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAVG-QPLQDHLAAVLHR 162          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y2730_MYCBP (UPF0678 fatty acid-binding protein-like protein BCG_2730c OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=BCG_2730c PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.466e-23
Identity = 61/158 (38.61%), Postives = 92/158 (58.23%), Query Frame = 2
Query:   20 PAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE--------LVGNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 469
            PA+  +S LLG+W G+G+G YPTI  F+Y EE+ F H G KP + YTQ+T  +  G+P+H+E+GY R    G +E+V+A  +G+ E++ GTY+    VI+L+          L   A +V  + R + +   EL Y +QM       L+ HL AVL +
Sbjct:    7 PALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVG-KPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAVG-QPLQDHLAAVLHR 162          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y2717_MYCTU (UPF0678 fatty acid-binding protein-like protein Rv2717c/MT2790 OS=Mycobacterium tuberculosis GN=Rv2717c PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.466e-23
Identity = 61/158 (38.61%), Postives = 92/158 (58.23%), Query Frame = 2
Query:   20 PAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE--------LVGNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 469
            PA+  +S LLG+W G+G+G YPTI  F+Y EE+ F H G KP + YTQ+T  +  G+P+H+E+GY R    G +E+V+A  +G+ E++ GTY+    VI+L+          L   A +V  + R + +   EL Y +QM       L+ HL AVL +
Sbjct:    7 PALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVG-KPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAVG-QPLQDHLAAVLHR 162          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y302_MYCGI (UPF0678 fatty acid-binding protein-like protein Mflv_0302 OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_0302 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.275e-23
Identity = 61/163 (37.42%), Postives = 92/163 (56.44%), Query Frame = 2
Query:    8 VPVHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKG------TYNAEEKVIKLQSELVGNASKVREVS---RVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 469
            VP+HP +  ++ LLG W G+G+G YPT+ +F Y EE+ F H  GKP ++Y Q+T     G P+H+E+GY R      +E ++A  TG+ E+ +G      T   +   I ++S  VG ++  +EVS   R  EL    L Y V+MA   +  L+ HL AVL +
Sbjct:    5 VPLHPDVVALAPLLGVWVGEGTGEYPTVPSFAYTEEITFGHV-GKPFLSYVQRTRAADDGRPLHSETGYVRSPAPHCVEWILAHPTGITEILEGILERIVTGEGDTLRIDVESTAVGRSASAKEVSAVGRTIELAGDTLTYSVRMAAVGM-PLQHHLSAVLHR 165          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y4114_NOCFA (UPF0678 fatty acid-binding protein-like protein NFA_41140 OS=Nocardia farcinica GN=NFA_41140 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.117e-22
Identity = 62/160 (38.75%), Postives = 93/160 (58.13%), Query Frame = 2
Query:    8 VPVHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYW-RPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKL--QSELVGNASKVREVS---RVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 469
            V +HP IA ++ LLGTWRG G G YPTI +FDY EE++F H  G+P + Y Q+T       PMHAE+GY  RP PD  +E+++A  TG+ E+ +G+    +  +++   S  +G +S  + V+   R F +    + Y ++MA      L  HL A LR+
Sbjct:   11 VALHPDIAALAPLLGTWRGAGHGQYPTIESFDYHEEISFGHL-GRPFLTYRQRTRAADGSRPMHAETGYLRRPRPD-HVELILAHPTGITEICEGSLTIADGELRMDFDSTHIGRSSTAKLVTALGRSFRVAGDTIEYSLRMAAVG-EPLTHHLAATLRR 167          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y442_STRGG (UPF0678 fatty acid-binding protein-like protein SGR_442 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=SGR_442 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.610e-22
Identity = 61/159 (38.36%), Postives = 90/159 (56.60%), Query Frame = 2
Query:   17 HPAIAPISYLLGTWRGQGSGGYPTINA-FDYGEELNFTHSGGKPVIAYTQKTWKL-GSGEPMH---AESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVREVS---RVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 469
            HP +AP++  LGTWRG GSGGYPT++A F Y +E+ F+H  G+P +AY  + W L   G+P+     E+G+WR  PDG +E +I Q TG+ E+  G  +A +  + L +E V  A   +EV    R + L + +    V         L+ HL A LR+
Sbjct:   23 HPLLAPVTGYLGTWRGTGSGGYPTLDADFSYAQEVTFSHD-GRPFLAYEARAWLLDADGQPLRPSARETGWWRLQPDGRVEALITQPTGIAEISVG--HARDGAVDLATERVALAPTAKEVDATRRRYTLTDPDTLTFVHDLAAVGRPLQHHLSARLRR 178          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y1006_MYCLE (UPF0678 fatty acid-binding protein-like protein ML1006 OS=Mycobacterium leprae GN=ML1006 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.792e-21
Identity = 59/155 (38.06%), Postives = 88/155 (56.77%), Query Frame = 2
Query:   20 PAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNA-----EEKVIKLQSELVGNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 469
            P +  ++ LLG+W G+G G YPTI  F+Y EE+ F+H   +P + YTQKT  +  G+P+HAE+GY R    G IE+V+A  + + E++ GTY+      E +++     LV  A +V  + R F +   E  Y VQM       L+ HL AVL +
Sbjct:    7 PDLQALAPLLGSWVGRGMGKYPTIQPFEYLEEVVFSHLD-RPFLTYTQKTRAITDGKPLHAETGYLRVPQPGHIELVLAHHSDIAEIEVGTYSVTGDLIEVELVTTTIGLVPTAKQVTALGRFFRIDGDEFAYSVQMGAVG-QPLQDHLVAVLHR 159          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y6164_FRASN (UPF0678 fatty acid-binding protein-like protein Franean1_6164 OS=Frankia sp. (strain EAN1pec) GN=Franean1_6164 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.413e-20
Identity = 59/178 (33.15%), Postives = 89/178 (50.00%), Query Frame = 2
Query:    8 VPVHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGS-------GEPMHAESGYWR-------PNPDGS------IEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVREVSRVFELV----NGELRYVVQMATNHLTSLRPHLKAVLRK 469
            V +HP++ P+++L+GTWRG+G GGY  + +F YG+E+ F  + G+P + Y   TW           G PM  E+G+WR       P PDG       +EV++A   G+ E+  GT       I L S ++   +  REV+R   L      G+L Y + M       L+ HL A L +
Sbjct:   37 VDLHPSLLPLAFLVGTWRGEGVGGYEGMESFHYGQEITFA-ADGRPALGYVSHTWWADEPRDGREPGSPMATETGFWRVQPPATEPGPDGKVNGSPVVEVMLAHPFGIAEIYVGTVTGTR--IDLDSNVLIRTATAREVTRSVRLYGLIEGGDLAYAIDMEAGG-KPLQSHLSARLHR 210          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y5653_RHOSR (UPF0678 fatty acid-binding protein-like protein RHA1_ro05653 OS=Rhodococcus sp. (strain RHA1) GN=RHA1_ro05653 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.764e-20
Identity = 59/155 (38.06%), Postives = 87/155 (56.13%), Query Frame = 2
Query:   14 VHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVG---NASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 469
            V  A+AP +   G WRG+G G YPTI+ F Y EE+ F  +G KP +AY  +T + GSG P+H+ESG+ R   +   E+++AQ TG  E+ +G     E  I+L   ++    +A  V  + R   +  G+L Y + MA + LT L  HL   LR+
Sbjct:   28 VPSALAPFA---GLWRGEGEGAYPTIDDFAYTEEIEFAPTG-KPFLAYRSRTREAGSGRPLHSESGFLRLVGEDEAELLVAQPTGFTEIHRG--QVREGTIELSMVVLSASPDAKPVHSIRRQLSVRGGDLTYDLWMA-HDLTPLTHHLHGHLRR 175          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y4252_NOCSJ (UPF0678 fatty acid-binding protein-like protein Noca_4252 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=Noca_4252 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.854e-18
Identity = 56/157 (35.67%), Postives = 86/157 (54.78%), Query Frame = 2
Query:   14 VHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKL-GSGEPMH---AESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVREVS---RVFELVNGELRYVVQMATNHLTSLRPHLKAVL 463
            +HP   P+++LLG W G+G G YPTI  F YG+EL FTH  G+P   Y  + W +  +GE +     E+G+ R  P+G +E+++  +TG  EV  G   A +  ++L ++ V      +E +   R++  V G+L Y   MA      L+PHL A L
Sbjct:    9 LHPDCGPVAWLLGRWGGRGHGDYPTIEGFQYGQELVFTHD-GRPFFHYFARAWIVDDAGEKVREAAQEAGFLRCKPEGRVELLLTHNTGFAEVWYG--EAADGKLELTTDAVVRTESAKEYTGGKRLYGNVEGDLLYAYDMAAMG-QPLQPHLWARL 161          
The following BLAST results are available for this feature:
BLAST of CN184535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
Y2736_MYCBO1.466e-2338.61UPF0678 fatty acid-binding protein-like protein Mb... [more]
Y2730_MYCBP1.466e-2338.61UPF0678 fatty acid-binding protein-like protein BC... [more]
Y2717_MYCTU1.466e-2338.61UPF0678 fatty acid-binding protein-like protein Rv... [more]
Y302_MYCGI7.275e-2337.42UPF0678 fatty acid-binding protein-like protein Mf... [more]
Y4114_NOCFA2.117e-2238.75UPF0678 fatty acid-binding protein-like protein NF... [more]
Y442_STRGG3.610e-2238.36UPF0678 fatty acid-binding protein-like protein SG... [more]
Y1006_MYCLE1.792e-2138.06UPF0678 fatty acid-binding protein-like protein ML... [more]
Y6164_FRASN4.413e-2033.15UPF0678 fatty acid-binding protein-like protein Fr... [more]
Y5653_RHOSR5.764e-2038.06UPF0678 fatty acid-binding protein-like protein RH... [more]
Y4252_NOCSJ1.854e-1835.67UPF0678 fatty acid-binding protein-like protein No... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184535 ID=CN184535; Name=CN184535; organism=Citrus sinensis; type=EST; length=606bp
AGGTGGAGTTCCAGTACACCCAGCAATAGCACCAATATCCTACTTGCTGG
GAACATGGAGAGGCCAAGGCTCGGGTGGGTACCCTACCATCAATGCCTTC
GATTATGGAGAAGAGCTCAATTTCACACATTCTGGTGGCAAGCCAGTGAT
AGCATATACCCAGAAGACTTGGAAACTGGGTTCAGGAGAGCCTATGCATG
CTGAGAGTGGCTACTGGAGGCCCAACCCTGATGGTTCCATTGAAGTTGTC
ATTGCTCAAAGCACTGGCCTTGTTGAAGTTCAGAAAGGAACATATAATGC
AGAAGAGAAAGTAATCAAGCTTCAGAGTGAACTTGTGGGAAATGCTTCCA
AGGTGCGAGAGGTAAGCAGAGTTTTTGAGCTGGTTAATGGTGAACTGCGT
TATGTGGTTCAAATGGCTACCAACCACCTGACTAGTCTTCGTCCACATCT
GAAAGCCGTGCTCAGGAAACTATGATTGTACAATCACTATGTTATTTCTC
TTGATATACTGGCAAAGCGCTCTATGAATGAGCATCTGTTGTAGTGGTAC
TGACTTGTTGGGGAAGGTTTTGGTTTCATAATAATAAAAAACTGCTCTCA
AAAAAA
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