CN184535

Overview
NameCN184535
Unique NameCN184535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9784 contig Csv1_Contig9784:56..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y4179_STRCO (UPF0678 fatty acid-binding protein-like protein SCO4179 OS=Streptomyces coelicolor GN=SCO4179 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.619e-14
Identity = 43/160 (26.88%), Postives = 84/160 (52.50%), Query Frame = 2
Query:   14 VHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSG----EPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVREVS---RVFELVNGELRYVVQMATNHLTSLRPHLKAVLRKL 472
            +H  + P+ +LLG W G G   +P     ++G+E++FTH  G+  + Y   TW L +      P+ +E G+WR + +  +EV + +  G++E+  G    ++  I L ++ V   +  +  +   R++  V  +L +V +  T  +  LRP++ A L+K+
Sbjct:    8 LHKDLVPLVFLLGDWAGAGVHDFPGAEKCNFGQEVSFTHD-GRDFLEYQSHTWVLDNDGNKVRPLESEHGFWRIDANRKVEVTMTRDDGVIEIWYGELADQKPQIDLVTDAVARTAASQPYTGGKRLYGYVKSDLMWVGEKQTPEV-ELRPYMSAHLKKV 165          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y882_KINRD (UPF0678 fatty acid-binding protein-like protein Krad_0882 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=Krad_0882 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.173e-14
Identity = 55/171 (32.16%), Postives = 87/171 (50.88%), Query Frame = 2
Query:   26 IAPISYLLGTWRGQGSGGYPTINAFD--YGEELNFTHSGGKPVIAYTQKTWKL----GSGEPMHAESGYWRPNP---------DG----SIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVREV---SRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRKL 472
            + P+S+LLG W G G  G+P     D  +G+ + F H G +  + YT  TW L     + EP+  E+GYWRP P         +G     +EV++A  TG+VEV  GT  A    I L S++V   +   E    +R++ +V G+L + + +A      LR +  A L+++
Sbjct:   13 LVPLSWLLGRWEGAGVLGHPARGDSDTRFGQVVEFGHDG-RDFLTYTSTTWALDEDGSTTEPLDVETGYWRPQPVDLDTPAPAEGPRPVELEVLLAHPTGVVEVLVGT--ARGPRIDLSSDVVARTATAHEYTAGNRMYGMVEGDLLWALDVALEG-HPLRSYASARLKRV 179          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y2872_THEFY (UPF0678 fatty acid-binding protein-like protein Tfu_2872 OS=Thermobifida fusca (strain YX) GN=Tfu_2872 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 53/175 (30.29%), Postives = 83/175 (47.43%), Query Frame = 2
Query:   14 VHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGS----GEPMHAESGYWR------------PNPDGSIEVVIAQSTGLVEVQKGTYNAE------EKVIKLQSELVGNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRKL 472
            +HP +A +S+LLG W G G  GYP    F + + + FTH  G P + Y  + W++      GEP+ +ESGYWR              P   +EV+I+   G  EV  GT  A       + V++ ++ L   AS    +  +F      L Y   +A N    L+P++ A L+++
Sbjct:    5 MHPELAKLSFLLGRWEGLGVAGYPDTEEFQFTQVIEFTHD-GHPHLNYRSQVWRVNEDGSRGEPVTSESGYWRVRTGKAAQQEDPDQPPIHVEVLISHPEGYSEVYLGTVFAHRVELHTDVVVRTETGLPAAAS--HRLYGLFGDNRETLGYAWDLAANS-KELQPYMSAQLQRV 175          
The following BLAST results are available for this feature:
BLAST of CN184535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
Y4179_STRCO3.619e-1426.88UPF0678 fatty acid-binding protein-like protein SC... [more]
Y882_KINRD6.173e-1432.16UPF0678 fatty acid-binding protein-like protein Kr... [more]
Y2872_THEFY1.053e-1330.29UPF0678 fatty acid-binding protein-like protein Tf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184535 ID=CN184535; Name=CN184535; organism=Citrus sinensis; type=EST; length=606bp
AGGTGGAGTTCCAGTACACCCAGCAATAGCACCAATATCCTACTTGCTGG
GAACATGGAGAGGCCAAGGCTCGGGTGGGTACCCTACCATCAATGCCTTC
GATTATGGAGAAGAGCTCAATTTCACACATTCTGGTGGCAAGCCAGTGAT
AGCATATACCCAGAAGACTTGGAAACTGGGTTCAGGAGAGCCTATGCATG
CTGAGAGTGGCTACTGGAGGCCCAACCCTGATGGTTCCATTGAAGTTGTC
ATTGCTCAAAGCACTGGCCTTGTTGAAGTTCAGAAAGGAACATATAATGC
AGAAGAGAAAGTAATCAAGCTTCAGAGTGAACTTGTGGGAAATGCTTCCA
AGGTGCGAGAGGTAAGCAGAGTTTTTGAGCTGGTTAATGGTGAACTGCGT
TATGTGGTTCAAATGGCTACCAACCACCTGACTAGTCTTCGTCCACATCT
GAAAGCCGTGCTCAGGAAACTATGATTGTACAATCACTATGTTATTTCTC
TTGATATACTGGCAAAGCGCTCTATGAATGAGCATCTGTTGTAGTGGTAC
TGACTTGTTGGGGAAGGTTTTGGTTTCATAATAATAAAAAACTGCTCTCA
AAAAAA
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